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  5. LOC_Os01g57958.1

LOC_Os01g57958.1 (LOC_Os01g57958)


Aliases : LOC_Os01g57958

Description : 50S ribosomal protein L16, chloroplastic OS=Oryza nivara (sp|q6end6|rk16_oryni : 218.0)


Gene families : OG0004825 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004825_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g57958.1

Target Alias Description ECC score Gene Family Method Actions
ATCG00790 RPL16 ribosomal protein L16 0.12 OrthoFinder output from all 47 species
ATMG00080 RPL16 ribosomal protein L16 0.04 OrthoFinder output from all 47 species
Ceric.05G042300.1 RPL16, Ceric.05G042300 component *(uL16c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ceric.05G052200.1 RPL16, Ceric.05G052200 not classified & original description: pacid=50577977... 0.05 OrthoFinder output from all 47 species
Ceric.29G004300.1 RPL16, Ceric.29G004300 not classified & original description: pacid=50624823... 0.07 OrthoFinder output from all 47 species
Ceric.38G009100.1 RPL16, Ceric.38G009100 component *(uL16c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Cre06.g278224 No alias 60S ribosomal protein L16, mitochondrial OS=Prototheca... 0.01 OrthoFinder output from all 47 species
Gb_40955 RPL16 50S ribosomal protein L16, chloroplastic... 0.07 OrthoFinder output from all 47 species
LOC_Os05g22724.1 LOC_Os05g22724 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... 0.08 OrthoFinder output from all 47 species
Mp1g22400.1 No alias 60S ribosomal protein L16, mitochondrial OS=Marchantia... 0.06 OrthoFinder output from all 47 species
Ore_g00369 RPL16 component *(uL16c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0150.g023360 RPL16 not classified & original description: CDS=1-189 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s3366.g028729 RPL16 component *(uL16c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s3471.g028812 RPL16 component *(uL16c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Sam_g33347 No alias component *(uL16m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Smo137887 RPL16 50S ribosomal protein L16, chloroplastic OS=Huperzia lucidula 0.11 OrthoFinder output from all 47 species
Solyc00g500032.1.1 RPL16, Solyc00g500032 50S ribosomal protein L16, chloroplastic OS=Atropa... 0.17 OrthoFinder output from all 47 species
Solyc00g500077.1.1 RPL16, Solyc00g500077 50S ribosomal protein L16, chloroplastic OS=Atropa... 0.17 OrthoFinder output from all 47 species
Solyc00g500245.1.1 Solyc00g500245 component mtRPL16 of large ribosomal subunit proteome.... 0.03 OrthoFinder output from all 47 species
Solyc08g074700.1.1 RPL16, Solyc08g074700 component mtRPL16 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
InterPro domains Description Start Stop
IPR016180 Ribosomal_L10e/L16 2 115
No external refs found!