Aliases : LOC_Os01g58630
Description : Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana (sp|q9lxf2|pp385_arath : 241.0)
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os01g58630.1 | |
| Cluster | HCCA: Cluster_64 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00032p00176600 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g003733 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g004360 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g014779 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g060808 | EMB2261 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g069034 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g086093 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g099276 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g108076 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g117996 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g23881 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g07409 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g08304 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0179.g056242 | No alias | not classified & original description: CDS=1-2559 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0228.g059086 | No alias | not classified & original description: CDS=12-1547 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0236.g059498 | No alias | not classified & original description: CDS=1-2331 | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g13254 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g05762 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g14557 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os12g06650.1 | LOC_Os12g06650 | Pentatricopeptide repeat-containing protein At4g15720... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os12g08140.1 | LOC_Os12g08140 | Pentatricopeptide repeat-containing protein At2g33760... | 0.04 | OrthoFinder output from all 47 species | |
| Len_g18599 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g32892 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g02080 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g28341 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g34513 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g63507 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g15680 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g28556 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g30213 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g44704 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g59344 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0015.g006451 | No alias | not classified & original description: CDS=1-639 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0232.g026457 | No alias | not classified & original description: CDS=1-363 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g21944 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g02585 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g14323 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g55588 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e019482_P001 | Zm00001e019482 | Pentatricopeptide repeat-containing protein At5g48910... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001510 | RNA methylation | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006400 | tRNA modification | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
| MF | GO:0008175 | tRNA methyltransferase activity | IEP | HCCA |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| MF | GO:0016426 | tRNA (adenine) methyltransferase activity | IEP | HCCA |
| MF | GO:0016429 | tRNA (adenine-N1-)-methyltransferase activity | IEP | HCCA |
| BP | GO:0030488 | tRNA methylation | IEP | HCCA |
| CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | HCCA |
| BP | GO:0032259 | methylation | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| CC | GO:0034708 | methyltransferase complex | IEP | HCCA |
| BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
| CC | GO:0043527 | tRNA methyltransferase complex | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| CC | GO:1902494 | catalytic complex | IEP | HCCA |
| CC | GO:1990234 | transferase complex | IEP | HCCA |
| No external refs found! |
