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  5. LOC_Os01g62350.1

LOC_Os01g62350.1 (LOC_Os01g62350)


Aliases : LOC_Os01g62350

Description : component RPL36 of LSU proteome component


Gene families : OG0000800 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000800_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g62350.1
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00179170 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder output from all 47 species
AT2G37600 No alias Ribosomal protein L36e family protein 0.15 OrthoFinder output from all 47 species
AT3G53740 No alias Ribosomal protein L36e family protein 0.19 OrthoFinder output from all 47 species
AT5G02450 No alias Ribosomal protein L36e family protein 0.23 OrthoFinder output from all 47 species
Adi_g022992 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g035376 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g067485 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Als_g30265 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g37408 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aob_g15614 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g16043 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Aop_g32159 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Aspi01Gene34579.t1 Aspi01Gene34579 component *(eL36) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aspi01Gene41378.t1 Aspi01Gene41378 component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Azfi_s0049.g030800 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Azfi_s0383.g067431 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Cba_g03577 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g23777 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g76479 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ceric.04G069000.1 Ceric.04G069000 component *(eL36) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.08G064600.1 Ceric.08G064600 component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021493.69 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Cre12.g484050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 OrthoFinder output from all 47 species
Dac_g01113 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Dac_g25734 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dcu_g17175 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.19 OrthoFinder output from all 47 species
Dde_g37416 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ehy_g04197 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01026914001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.23 OrthoFinder output from all 47 species
GSVIVT01028917001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder output from all 47 species
Gb_10248 No alias component RPL36 of LSU proteome component 0.1 OrthoFinder output from all 47 species
Gb_27261 No alias component RPL36 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Lfl_g17407 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g38888 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_10430792g0010 No alias component RPL36 of LSU proteome component 0.13 OrthoFinder output from all 47 species
MA_24782g0010 No alias component RPL36 of LSU proteome component 0.06 OrthoFinder output from all 47 species
MA_69756g0010 No alias component RPL36 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Mp1g05460.1 No alias component RPL36 of LSU proteome component 0.09 OrthoFinder output from all 47 species
Msp_g00137 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Nbi_g39400 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g07917 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g56562 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c14_19960V3.1 Pp3c14_19960 Ribosomal protein L36e family protein 0.15 OrthoFinder output from all 47 species
Pp3c1_32310V3.1 Pp3c1_32310 Ribosomal protein L36e family protein 0.04 OrthoFinder output from all 47 species
Ppi_g25844 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g28256 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g33926 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g34019 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ppi_g45797 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004334 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g07231 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.22 OrthoFinder output from all 47 species
Sam_g23546 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g31192 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.19 OrthoFinder output from all 47 species
Sam_g41738 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g45996 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g46575 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g48487 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Smo267958 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
Smo439710 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Solyc03g025520.4.1 Solyc03g025520 component RPL36 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Solyc06g036050.4.1 Solyc06g036050 component RPL36 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Spa_g03176 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Spa_g03177 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Spa_g42185 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Spa_g44897 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e027238_P001 Zm00001e027238 component RPL36 of LSU proteome component 0.19 OrthoFinder output from all 47 species
Zm00001e031832_P002 Zm00001e031832 component RPL36 of LSU proteome component 0.22 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
BP GO:0006449 regulation of translational termination IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043244 regulation of protein-containing complex disassembly IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045901 positive regulation of translational elongation IEP HCCA
BP GO:0045905 positive regulation of translational termination IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000509 Ribosomal_L36e 8 101
No external refs found!