1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os01g67540.1

LOC_Os01g67540.1 (LOC_Os01g67540)


Aliases : LOC_Os01g67540

Description : 4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp. japonica (sp|q8ru95|4cll6_orysj : 944.0)


Gene families : OG0000359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000359_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g67540.1
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00239750 OPCL1,... Phytohormones.jasmonic acid.synthesis.OPC-8:CoA synthetase 0.02 OrthoFinder output from all 47 species
AT1G20490 No alias AMP-dependent synthetase and ligase family protein 0.02 OrthoFinder output from all 47 species
AT1G20500 No alias AMP-dependent synthetase and ligase family protein 0.03 OrthoFinder output from all 47 species
AT5G38120 4CL8 AMP-dependent synthetase and ligase family protein 0.03 OrthoFinder output from all 47 species
Adi_g020210 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g45907 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04413 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11897 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20640 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g62669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06175 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17436 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g27234 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g30549 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g37015 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene26222.t1 Aspi01Gene26222 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34196.t1 OPCL1, Aspi01Gene34196 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene45695.t2 OPCL1, Aspi01Gene45695 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63195.t1 OPCL1, Aspi01Gene63195 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s1020.g095355 No alias not classified & original description: CDS=69-1760 0.03 OrthoFinder output from all 47 species
Cba_g25397 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29974 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g62425 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G077600.1 Ceric.11G077600 not classified & original description: pacid=50595629... 0.04 OrthoFinder output from all 47 species
Ceric.25G005800.1 OPCL1, Ceric.25G005800 not classified & original description: pacid=50594129... 0.03 OrthoFinder output from all 47 species
Ceric.36G025100.1 OPCL1, Ceric.36G025100 not classified & original description: pacid=50568001... 0.03 OrthoFinder output from all 47 species
Dac_g10656 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g12985 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g28355 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01385 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g10363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04748 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01001827001 No alias 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_18693 OPCL1 OPC-8:CoA synthetase 0.01 OrthoFinder output from all 47 species
Gb_19726 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os01g67530.1 LOC_Os01g67530 4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
LOC_Os07g17970.1 LOC_Os07g17970 4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Len_g14710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g01742 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08577 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15634 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10430515g0010 OPCL1 OPC-8:CoA synthetase 0.02 OrthoFinder output from all 47 species
MA_10432138g0010 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10922g0010 OPCL1 OPC-8:CoA synthetase 0.02 OrthoFinder output from all 47 species
Msp_g09388 OPCL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g10137 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g13004 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g20427 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g16468 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16903 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07522 OPCL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g16099 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g32502 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g42148 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g43795 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g58318 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g10259 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12256 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17189 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c3_24370V3.1 Pp3c3_24370 AMP-dependent synthetase and ligase family protein 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0210.g025886 OPCL1 not classified & original description: CDS=370-2175 0.03 OrthoFinder output from all 47 species
Sam_g29127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo123905 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Solyc03g111170.3.1 Solyc03g111170 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc12g094520.2.1 OPCL1, Solyc12g094520 OPC-8:CoA synthetase 0.03 OrthoFinder output from all 47 species
Spa_g01541 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g05626 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g21116 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07385 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g26630 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008272 sulfate transport IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015116 sulfate transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0072348 sulfur compound transport IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:1901682 sulfur compound transmembrane transporter activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR025110 AMP-bd_C 506 581
IPR000873 AMP-dep_Synth/Lig_com 90 497
No external refs found!