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  5. LOC_Os01g69830.1

LOC_Os01g69830.1 (SPL13, SPL13A, LOC_Os01g69830)


Aliases : SPL13, SPL13A, LOC_Os01g69830

Description : transcription factor (SBP)


Gene families : OG0000121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g69830.1
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AT1G27360 SPL11 squamosa promoter-like 11 0.04 OrthoFinder output from all 47 species
AT1G27370 SPL10 squamosa promoter binding protein-like 10 0.04 OrthoFinder output from all 47 species
AT2G33810 SPL3 squamosa promoter binding protein-like 3 0.04 OrthoFinder output from all 47 species
AT2G42200 AtSPL9, SPL9 squamosa promoter binding protein-like 9 0.04 OrthoFinder output from all 47 species
AT3G15270 SPL5 squamosa promoter binding protein-like 5 0.04 OrthoFinder output from all 47 species
Aspi01Gene01159.t1 SPL7, ATSPL7,... SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g10627 SPL2 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01033519001 AtSPL9, SPL9 RNA biosynthesis.transcriptional activation.SBP... 0.03 OrthoFinder output from all 47 species
Gb_03922 SPL2 transcription factor (SBP) 0.04 OrthoFinder output from all 47 species
Gb_26599 SPL10 transcription factor (SBP) 0.03 OrthoFinder output from all 47 species
Gb_38013 SPL2 transcription factor (SBP) 0.04 OrthoFinder output from all 47 species
Gb_38014 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_3179g0020 SPL8 transcription factor (SBP) 0.03 OrthoFinder output from all 47 species
Mp1g10030.1 SPL2 transcription factor (SBP) 0.02 OrthoFinder output from all 47 species
Pir_g45078 SPL7, ATSPL7 regulatory protein *(SPL7) of copper homeostasis &... 0.06 OrthoFinder output from all 47 species
Sam_g14898 No alias SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30123 No alias SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g077920.4.1 SPL3, Solyc02g077920 transcription factor (SBP) 0.03 OrthoFinder output from all 47 species
Zm00001e013795_P002 SPL8, Zm00001e013795 transcription factor (SBP) 0.05 OrthoFinder output from all 47 species
Zm00001e025110_P001 SPL8, Zm00001e025110 transcription factor (SBP) 0.03 OrthoFinder output from all 47 species
Zm00001e025234_P001 SPL2, Zm00001e025234 transcription factor (SBP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
BP GO:0009617 response to bacterium IEP HCCA
BP GO:0009620 response to fungus IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0042742 defense response to bacterium IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043207 response to external biotic stimulus IEP HCCA
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0050832 defense response to fungus IEP HCCA
BP GO:0051707 response to other organism IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
InterPro domains Description Start Stop
IPR004333 SBP_dom 92 166
No external refs found!