LOC_Os01g70270.1 (HSS, ARF1-BP, ARF2,...)

Aliases : HSS, ARF1-BP, ARF2, ORE14, LOC_Os01g70270

Description : transcription factor (ARF)

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g70270.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00200760	ARF4,...	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
AMTR_s00021p00221770	ARF1,...	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
Adi_g014256	ARF16	ARF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Adi_g061151	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g14726	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g06737	ARF6	ARF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Azfi_s0019.g015120	ARF10	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.18G060100.1	ARF1, Ceric.18G060100	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.28G004000.1	HSS, ARF1-BP,...	ARF-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
GSVIVT01004942001	HSS, ARF1-BP, ARF2, ORE14	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
GSVIVT01021553001	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.06	OrthoFinder output from all 47 species
Gb_12414	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.07	OrthoFinder output from all 47 species
Gb_23186	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Gb_39685	ARF6	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Lfl_g07404	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_10432580g0010	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Ore_g10460	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e014833_P002	ARF1, Zm00001e014833	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e020205_P004	ARF3, ETT, Zm00001e020205	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Zm00001e028396_P001	HSS, ARF1-BP,...	transcription factor (ARF)	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR033389	AUX/IAA_dom	673	728
IPR033389	AUX/IAA_dom	734	777
IPR010525	ARF_dom	255	336
IPR003340	B3_DNA-bd	129	230

External Links

No external refs found!

LOC_Os01g70270.1 (HSS, ARF1-BP, ARF2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation