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  5. LOC_Os01g72930.1

LOC_Os01g72930.1 (LOC_Os01g72930)


Aliases : LOC_Os01g72930

Description : Pentatricopeptide repeat-containing protein At3g13880 OS=Arabidopsis thaliana (sp|q9lrv9|pp228_arath : 591.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g72930.1
Cluster HCCA: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
Adi_g004435 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g007782 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g026204 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107292 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g26992 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0065.g035815 No alias not classified & original description: CDS=1-2163 0.01 OrthoFinder output from all 47 species
Azfi_s1334.g101644 No alias not classified & original description: CDS=1-3543 0.01 OrthoFinder output from all 47 species
Cba_g20760 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29632 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75092 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g06677 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g09099 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g10023 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01015461001 ABCG40, PDR12,... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Len_g19012 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g26318 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g15230 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g41131 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g46044 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g04960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g01899 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g57859 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g14712 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25339 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo110549 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Solyc07g005850.3.1 Solyc07g005850 Pentatricopeptide repeat-containing protein At4g30700... 0.02 OrthoFinder output from all 47 species
Spa_g06871 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g12101 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g13336 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17559 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g19427 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g44238 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e007462_P001 Zm00001e007462 Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 485 532
IPR002885 Pentatricopeptide_repeat 384 431
IPR002885 Pentatricopeptide_repeat 276 329
IPR002885 Pentatricopeptide_repeat 176 205
IPR002885 Pentatricopeptide_repeat 251 274
IPR002885 Pentatricopeptide_repeat 148 169
IPR002885 Pentatricopeptide_repeat 75 104
IPR002885 Pentatricopeptide_repeat 47 73
IPR032867 DYW_dom 658 775
No external refs found!