1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os02g06920.2

LOC_Os02g06920.2 (LOC_Os02g06920)


Aliases : LOC_Os02g06920

Description : RING-v-class E3 ligase


Gene families : OG0000484 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000484_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g06920.2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00170p00024360 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT5G59000 No alias RING/FYVE/PHD zinc finger superfamily protein 0.03 OrthoFinder output from all 47 species
Als_g33633 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g23757 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0293.g063480 No alias E3 ubiquitin ligase & original description: CDS=497-1888 0.04 OrthoFinder output from all 47 species
Ceric.04G002800.1 Ceric.04G002800 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.15G009300.1 Ceric.15G009300 E3 ubiquitin ligase & original description:... 0.02 OrthoFinder output from all 47 species
Dde_g19756 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
MA_352312g0010 No alias RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Msp_g05831 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03458 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g11364 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g31283 No alias E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g10913 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12012 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g016770.3.1 Solyc06g016770 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc07g044780.3.1 Solyc07g044780 RING-v-class E3 ligase 0.05 OrthoFinder output from all 47 species
Solyc11g069350.2.1 Solyc11g069350 RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
Tin_g02444 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e014864_P002 Zm00001e014864 RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e040499_P001 Zm00001e040499 RING-v-class E3 ligase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 243 290
No external refs found!