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  5. LOC_Os02g11050.1

LOC_Os02g11050.1 (ATSUG1, RPT6A, LOC_Os02g11050)


Aliases : ATSUG1, RPT6A, LOC_Os02g11050

Description : regulatory component RPT6 of 26S proteasome


Gene families : OG0004338 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004338_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g11050.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00217520 ATSUG1, RPT6A,... Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
AT5G19990 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A 0.05 OrthoFinder output from all 47 species
AT5G20000 No alias AAA-type ATPase family protein 0.06 OrthoFinder output from all 47 species
Aev_g07060 ATSUG1, RPT6A regulatory component *(RPT6) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Ala_g04855 ATSUG1, RPT6A regulatory component *(RPT6) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene40776.t1 ATSUG1, RPT6A,... regulatory component *(RPT6) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Azfi_s0290.g063325 ATSUG1, RPT6A regulatory component *(RPT6) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Ceric.37G056200.1 ATSUG1, RPT6A,... regulatory component *(RPT6) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000792.28 ATSUG1, RPT6A Protein degradation.26S proteasome.regulatory... 0.1 OrthoFinder output from all 47 species
Cre04.g216600 ATSUG1, RPT6A Protein degradation.26S proteasome.regulatory... 0.14 OrthoFinder output from all 47 species
Dcu_g04554 ATSUG1, RPT6A regulatory component *(RPT6) of 26S proteasome &... 0.07 OrthoFinder output from all 47 species
Gb_08346 ATSUG1, RPT6A regulatory component RPT6 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Len_g15696 ATSUG1, RPT6A regulatory component *(RPT6) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Mp1g04290.1 ATSUG1, RPT6A regulatory component RPT6 of 26S proteasome 0.11 OrthoFinder output from all 47 species
Msp_g06734 ATSUG1, RPT6A regulatory component *(RPT6) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Pp3c10_2600V3.1 ATSUG1, RPT6A,... regulatory particle triple-A ATPase 6A 0.02 OrthoFinder output from all 47 species
Pp3c1_21950V3.1 ATSUG1, RPT6A,... regulatory particle triple-A ATPase 6A 0.03 OrthoFinder output from all 47 species
Smo441130 ATSUG1, RPT6A Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Solyc05g018570.3.1 ATSUG1, RPT6A,... regulatory component RPT6 of 26S proteasome 0.08 OrthoFinder output from all 47 species
Solyc05g018590.3.1 ATSUG1, RPT6A,... regulatory component RPT6 of 26S proteasome 0.12 OrthoFinder output from all 47 species
Zm00001e014515_P001 ATSUG1, RPT6A,... regulatory component RPT6 of 26S proteasome 0.09 OrthoFinder output from all 47 species
Zm00001e024980_P001 ATSUG1, RPT6A,... regulatory component RPT6 of 26S proteasome 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 203 336
IPR032501 Prot_ATP_ID_OB_C 90 145
IPR041569 AAA_lid_3 360 402
No external refs found!