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  5. LOC_Os02g12850.1

LOC_Os02g12850.1 (LOC_Os02g12850)


Aliases : LOC_Os02g12850

Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 174.0)


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g12850.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00061p00188860 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00065p00083440 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT5G40490 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Adi_g013859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g19414 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g24129 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26133 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g16236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g008091 No alias not classified & original description: CDS=1-1311 0.03 OrthoFinder output from all 47 species
Cba_g09256 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.19G061100.1 Ceric.19G061100 not classified & original description: pacid=50575703... 0.03 OrthoFinder output from all 47 species
Ceric.35G060600.1 Ceric.35G060600 not classified & original description: pacid=50581737... 0.03 OrthoFinder output from all 47 species
Ceric.36G044000.1 Ceric.36G044000 not classified & original description: pacid=50569069... 0.03 OrthoFinder output from all 47 species
Dac_g03739 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02961 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g33739 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03669 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17151 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01012784001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01016872001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_04294 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Lfl_g06009 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10432683g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_125759g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_473g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_68291g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp1g27850.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Ore_g19415 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10456 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000411 No alias not classified & original description: CDS=1-1413 0.02 OrthoFinder output from all 47 species
Sam_g11715 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37589 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50608 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52022 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo101375 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Solyc02g093340.3.1 Solyc02g093340 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc03g005680.3.1 Solyc03g005680 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc03g121710.2.1 Solyc03g121710 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc07g045240.3.1 Solyc07g045240 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc09g090520.3.1 Solyc09g090520 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Spa_g11285 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20205 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e012709_P005 Zm00001e012709 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Zm00001e014461_P003 Zm00001e014461 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.12 OrthoFinder output from all 47 species
Zm00001e024336_P003 Zm00001e024336 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Zm00001e024934_P002 Zm00001e024934 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Zm00001e030652_P001 Zm00001e030652 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.12 OrthoFinder output from all 47 species
Zm00001e037155_P004 Zm00001e037155 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 68 135
IPR000504 RRM_dom 157 226
No external refs found!