LOC_Os02g13180.1 (SK9, ASK9, LOC_Os02g13180)

Aliases : SK9, ASK9, LOC_Os02g13180

Description : target protein binding component SKP1/ASK1 of SKP1-CUL1-FBX (SCF) E3 ligase complexes

Gene families : OG0000379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000379_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g13180.1

Target	Alias	Description	ECC score	Gene Family Method
AT2G25700	ASK3, SK3	SKP1-like 3	0.03	OrthoFinder output from all 47 species
Aop_g45132	ASK1, ATSKP1,...	ASK-type linker component of SCF E3 ubiquitin ligase...	0.01	OrthoFinder output from all 47 species
LOC_Os07g05160.1	ASK4, SK4, LOC_Os07g05160	target protein binding component SKP1/ASK1 of...	0.03	OrthoFinder output from all 47 species
LOC_Os09g10270.1	ASK4, SK4, LOC_Os09g10270	target protein binding component SKP1/ASK1 of...	0.03	OrthoFinder output from all 47 species
Pir_g51363	ASK1, ATSKP1,...	ASK-type linker component of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Zm00001e011336_P001	ASK2, SKP1B,...	target protein binding component SKP1/ASK1 of...	0.02	OrthoFinder output from all 47 species
Zm00001e013384_P001	ASK2, SKP1B,...	target protein binding component SKP1/ASK1 of...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR016072	Skp1_comp_dimer	146	192

External Links

No external refs found!