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  5. LOC_Os02g24614.1

LOC_Os02g24614.1 (RPOC1, LOC_Os02g24614)


Aliases : RPOC1, LOC_Os02g24614

Description : RpoC1 core component plastid-encoded RNA polymerase


Gene families : OG0006500 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006500_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g24614.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
ATCG00180 RPOC1 DNA-directed RNA polymerase family protein 0.13 OrthoFinder output from all 47 species
Aev_g25869 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.15 OrthoFinder output from all 47 species
Als_g17479 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.03 OrthoFinder output from all 47 species
Cba_g01180 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.07 OrthoFinder output from all 47 species
Ceric.29G004700.1 RPOC1, Ceric.29G004700 not classified & original description: pacid=50625659... 0.07 OrthoFinder output from all 47 species
Ceric.38G010000.1 RPOC1, Ceric.38G010000 core component *(RpoC1) of plastid-encoded RNA... 0.17 OrthoFinder output from all 47 species
Dde_g17519 RPOC1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000405001 RPOC1 DNA-directed RNA polymerase subunit beta OS=Nasturtium officinale 0.03 OrthoFinder output from all 47 species
Mp4g02290.1 RPOC1 DNA-directed RNA polymerase subunit beta OS=Marchantia... 0.07 OrthoFinder output from all 47 species
Ore_g26219 RPOC1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g09480 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027469 No alias not classified & original description: CDS=1-663 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027470 RPOC1 not classified & original description: CDS=1-777 0.06 OrthoFinder output from all 47 species
Solyc01g017370.2.1 RPOC1, Solyc01g017370 DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.12 OrthoFinder output from all 47 species
Solyc01g017470.3.1 RPOC1, Solyc01g017470 DNA-directed RNA polymerase subunit beta OS=Solanum... 0.12 OrthoFinder output from all 47 species
Solyc08g014390.1.1 RPOC1, Solyc08g014390 DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007080 RNA_pol_Rpb1_1 8 371
IPR000722 RNA_pol_asu 425 513
IPR000722 RNA_pol_asu 373 427
No external refs found!