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  5. LOC_Os02g28500.1

LOC_Os02g28500.1 (LOC_Os02g28500)


Aliases : LOC_Os02g28500

Description : no hits & (original description: none)


Gene families : OG0006296 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006296_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g28500.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g18230.1 LOC_Os02g18230 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os02g39680.1 LOC_Os02g39680 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os05g11680.1 LOC_Os05g11680 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os05g23590.1 LOC_Os05g23590 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os06g28410.1 LOC_Os06g28410 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os10g17580.1 LOC_Os10g17580 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!