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  5. LOC_Os02g28720.1

LOC_Os02g28720.1 (PUB9, ATPUB9, LOC_Os02g28720)


Aliases : PUB9, ATPUB9, LOC_Os02g28720

Description : E3 ubiquitin ligase (PUB)


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g28720.1
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AT1G08315 No alias ARM repeat superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g059681 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17547 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g00725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.08G025200.1 Ceric.08G025200 not classified & original description: pacid=50638798... 0.03 OrthoFinder output from all 47 species
Ceric.10G010300.1 ATPUB17, PUB17,... not classified & original description: pacid=50611933... 0.03 OrthoFinder output from all 47 species
Dcu_g05458 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07191 PUB18, ATPUB18 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009347001 No alias U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01016225001 PUB14, ATPUB14 U-box domain-containing protein 14 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01021265001 ATPUB17, PUB17 U-box domain-containing protein 17 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01023893001 PUB15 U-box domain-containing protein 15 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_10627 PUB8, B80 U-box domain-containing protein 13 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_29276 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
MA_10426688g0010 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula... 0.03 OrthoFinder output from all 47 species
Pnu_g17548 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17363 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020568 PUB13, ATPUB13 E3 ubiquitin ligase & original description: CDS=347-2224 0.03 OrthoFinder output from all 47 species
Sam_g03488 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24702 No alias E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Smo99101 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula 0.03 OrthoFinder output from all 47 species
Solyc09g056450.4.1 PUB9, ATPUB9,... U-box domain-containing protein 9 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g05552 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01104 No alias E3 ubiquiTin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g16801 PUB13, ATPUB13 E3 ubiquiTin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e023475_P001 Zm00001e023475 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Zm00001e031915_P001 Zm00001e031915 U-box domain-containing protein 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e035415_P001 Zm00001e035415 U-box domain-containing protein 4 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e036734_P001 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006072 glycerol-3-phosphate metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046168 glycerol-3-phosphate catabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0052646 alditol phosphate metabolic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 83 153
IPR000225 Armadillo 297 333
No external refs found!