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  5. LOC_Os02g38300.1

LOC_Os02g38300.1 (VPS20.1, LOC_Os02g38300)


Aliases : VPS20.1, LOC_Os02g38300

Description : component VPS20 of ESCRT-III complex


Gene families : OG0004858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004858_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g38300.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g010251 VPS20.2 component *(VPS20) of ESCRT-III complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.24G055100.1 VPS20.2, Ceric.24G055100 component *(VPS20) of ESCRT-III complex & original... 0.03 OrthoFinder output from all 47 species
Dcu_g03492 VPS20.2 component *(VPS20) of ESCRT-III complex & original... 0.03 OrthoFinder output from all 47 species
Mp5g18760.1 VPS20.2 component VPS20 of ESCRT-III complex 0.02 OrthoFinder output from all 47 species
Sam_g28551 No alias component *(VPS20) of ESCRT-III complex & original... 0.04 OrthoFinder output from all 47 species
Solyc12g096650.2.1 VPS20.2, Solyc12g096650 component VPS20 of ESCRT-III complex 0.08 OrthoFinder output from all 47 species
Zm00001e015016_P002 VPS20.2, Zm00001e015016 component VPS20 of ESCRT-III complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
InterPro domains Description Start Stop
IPR005024 Snf7_fam 17 209
No external refs found!