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  5. LOC_Os02g39720.2

LOC_Os02g39720.2 (LOC_Os02g39720)


Aliases : LOC_Os02g39720

Description : RSZ21/22 RNA splicing factor


Gene families : OG0001173 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001173_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g39720.2

Target Alias Description ECC score Gene Family Method Actions
AT1G23860 RSZ21, At-RSZ21,... RS-containing zinc finger protein 21 0.04 OrthoFinder output from all 47 species
Cba_g02541 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20627 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g06419 RSZ21, At-RSZ21,... RNA splicing factor *(RSZ21/22) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01026164001 No alias No description available 0.03 OrthoFinder output from all 47 species
Ore_g06475 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g66414 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13208 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Smo68846 At-RSZ22a, RSZ22a RNA processing.RNA splicing.spliceosome-associated... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 87 102
IPR000504 RRM_dom 4 61
No external refs found!