LOC_Os02g42960.1 (LOC_Os02g42960)


Aliases : LOC_Os02g42960

Description : Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana (sp|q8h1q1|tl203_arath : 293.0)


Gene families : OG0006152 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006152_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g42960.1

Target Alias Description ECC score Gene Family Method Actions
AT1G12250 No alias Pentapeptide repeat-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g015162 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g08842 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g02920 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g04025 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g58664 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0006.g009606 No alias not classified & original description: CDS=49-915 0.02 OrthoFinder output from all 47 species
Ceric.20G040100.1 Ceric.20G040100 not classified & original description: pacid=50565962... 0.06 OrthoFinder output from all 47 species
Cre17.g721700 No alias Thylakoid lumenal protein TL20.3, chloroplastic... 0.04 OrthoFinder output from all 47 species
Dac_g13925 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g06102 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g11753 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g04356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01001267001 No alias Thylakoid lumenal protein TL20.3, chloroplastic... 0.12 OrthoFinder output from all 47 species
Gb_01023 No alias Thylakoid lumenal protein TL20.3, chloroplastic... 0.05 OrthoFinder output from all 47 species
Len_g28816 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10429697g0010 No alias Thylakoid lumenal protein TL20.3, chloroplastic... 0.02 OrthoFinder output from all 47 species
MA_8855586g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp8g12430.1 No alias Thylakoid lumenal protein TL20.3, chloroplastic... 0.03 OrthoFinder output from all 47 species
Msp_g07925 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g05641 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g18142 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g10023 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16845 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001784 No alias not classified & original description: CDS=1-996 0.04 OrthoFinder output from all 47 species
Sam_g15961 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo96317 No alias Thylakoid lumenal protein TL20.3, chloroplastic... 0.02 OrthoFinder output from all 47 species
Solyc08g079110.4.1 Solyc08g079110 Thylakoid lumenal protein TL20.3, chloroplastic... 0.07 OrthoFinder output from all 47 species
Spa_g08899 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g18697 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g10553 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004096 catalase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001646 5peptide_repeat 173 206
IPR001646 5peptide_repeat 131 167
No external refs found!