LOC_Os02g43600.1 (LOC_Os02g43600)

Aliases : LOC_Os02g43600

Description : component psRPL19 of large ribosomal subunit proteome

Gene families : OG0002345 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002345_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g43600.1
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00210720	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
AT4G17560	No alias	Ribosomal protein L19 family protein	0.18	OrthoFinder output from all 47 species
AT5G47190	No alias	Ribosomal protein L19 family protein	0.11	OrthoFinder output from all 47 species
Adi_g002310	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Adi_g008057	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g28795	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aob_g08190	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aop_g12532	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aspi01Gene53327.t1	Aspi01Gene53327	component *(bL19c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Cba_g10751	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ceric.24G049700.1	Ceric.24G049700	component *(bL19c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Cre17.g734450	No alias	50S ribosomal protein L19, chloroplastic OS=Mesostigma viride	0.16	OrthoFinder output from all 47 species
Dac_g03571	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dde_g00499	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ehy_g05444	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g06479	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Ehy_g13874	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
GSVIVT01002112001	No alias	Protein biosynthesis.organelle translation...	0.17	OrthoFinder output from all 47 species
Gb_05695	No alias	component psRPL19 of large ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
Len_g08100	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Lfl_g33279	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
MA_947876g0010	No alias	50S ribosomal protein L19-1, chloroplastic...	0.14	OrthoFinder output from all 47 species
Mp3g02740.1	No alias	component mtRPL19 of large ribosomal subunit proteome....	0.21	OrthoFinder output from all 47 species
Msp_g09265	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Nbi_g00593	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Pir_g02445	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012817	No alias	not classified & original description: CDS=1-963	0.13	OrthoFinder output from all 47 species
Sam_g17563	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Solyc08g078010.3.1	Solyc08g078010	component psRPL19 of large ribosomal subunit proteome	0.17	OrthoFinder output from all 47 species
Spa_g04552	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Tin_g01651	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Zm00001e015296_P001	Zm00001e015296	component psRPL19 of large ribosomal subunit proteome	0.16	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004418	hydroxymethylbilane synthase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006553	lysine metabolic process	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
MF	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009085	lysine biosynthetic process	IEP	HCCA
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
BP	GO:0046451	diaminopimelate metabolic process	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001857	Ribosomal_L19	133	226

External Links

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LOC_Os02g43600.1 (LOC_Os02g43600)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation