LOC_Os02g44810.1 (LOC_Os02g44810)

Aliases : LOC_Os02g44810

Description : tRNA pseudouridine synthase (TruA)

Gene families : OG0006025 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006025_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g44810.1

Target	Alias	Description	ECC score	Gene Family Method
AT1G20370	No alias	Pseudouridine synthase family protein	0.04	OrthoFinder output from all 47 species
AT1G76120	No alias	Pseudouridine synthase family protein	0.03	OrthoFinder output from all 47 species
Adi_g045626	No alias	EC_5.4 intramolecular transferase & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g12469	No alias	EC_5.4 intramolecular transferase & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g07265	No alias	EC_5.4 intramolecular transferase & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0051.g031259	No alias	EC_5.4 intramolecular transferase & original...	0.02	OrthoFinder output from all 47 species
Dcu_g10557	No alias	EC_5.4 intramolecular transferase & original description: none	0.04	OrthoFinder output from all 47 species
Mp7g06450.1	No alias	tRNA pseudouridine synthase (TruA)	0.04	OrthoFinder output from all 47 species
Pir_g07474	No alias	EC_5.4 intramolecular transferase & original description: none	0.02	OrthoFinder output from all 47 species
Solyc04g082070.4.1	Solyc04g082070	tRNA pseudouridine synthase (TruA)	0.04	OrthoFinder output from all 47 species
Tin_g10018	No alias	EC_5.4 intramolecular transferase & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e015383_P004	Zm00001e015383	tRNA pseudouridine synthase (TruA)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR020097	PsdUridine_synth_TruA_a/b_dom	385	490

External Links

No external refs found!