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  5. LOC_Os02g45250.1

LOC_Os02g45250.1 (HDG1, HD-GL2-1, LOC_Os02g45250)


Aliases : HDG1, HD-GL2-1, LOC_Os02g45250

Description : transcription factor (HD-ZIP IV)


Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g45250.1
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00094630 EDT1, HDG11,... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
AMTR_s00048p00089530 HDG5, HB-7,... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
AMTR_s00069p00091460 ANL2, AHDP RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
AT4G04890 PDF2 protodermal factor 2 0.06 OrthoFinder output from all 47 species
AT4G21750 ATML1 Homeobox-leucine zipper family protein / lipid-binding... 0.05 OrthoFinder output from all 47 species
Adi_g035710 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05481 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05536 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06757 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g14063 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18649 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05720 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07199 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09754 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21768 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene64351.t1 PDF2, Aspi01Gene64351 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0064.g035524 PDF2 HD-ZIP IV-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0100.g044331 PDF2 HD-ZIP IV-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0131.g049156 PDF2 HD-ZIP IV-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g06562 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G065600.1 PDF2, Ceric.04G065600 HD-ZIP IV-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.29G064400.1 ATML1, Ceric.29G064400 HD-ZIP IV-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.38G046700.1 PDF2, Ceric.38G046700 HD-ZIP IV-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dcu_g07731 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01012643001 PDF2 RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
GSVIVT01030605001 HDG2 RNA biosynthesis.transcriptional activation.HB... 0.05 OrthoFinder output from all 47 species
Len_g46600 HDG2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_10374232g0010 PDF2 transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species
MA_103885g0010 ATML1 transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
MA_110607g0010 PDF2 transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
MA_16767g0010 PDF2 transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
MA_17048g0010 HDG5, HB-7 transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species
MA_201415g0010 No alias transcription factor (HD-ZIP IV) 0.01 OrthoFinder output from all 47 species
MA_305431g0010 EDT1, HDG11, ATHDG11 transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
MA_93471g0010 ANL2, AHDP transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
Mp7g09710.1 ATML1 transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
Msp_g21421 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g25796 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g26336 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19174 EDT1, HDG11, ATHDG11 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11405 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g11487 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g17562 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001922 ATML1 HD-ZIP IV-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005255 ATML1 HD-ZIP IV-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sam_g12326 No alias HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g091630.3.1 ANL2, AHDP,... transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
Solyc02g080260.4.1 PDF2, Solyc02g080260 transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
Solyc03g098200.4.1 EDT1, HDG11,... transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
Solyc06g035883.1.1 ANL2, AHDP,... transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
Solyc06g072310.3.1 EDT1, HDG11,... transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
Solyc08g076370.3.1 HDG5, HB-7,... transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
Spa_g50253 HDG2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g51145 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g01261 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g02147 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g45820 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e002453_P001 HDG5, HB-7,... transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species
Zm00001e006870_P004 HDG2, Zm00001e006870 transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
Zm00001e015997_P002 EDT1, HDG11,... transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
Zm00001e017088_P001 HDG1, HD-GL2-1,... transcription factor (HD-ZIP IV) 0.06 OrthoFinder output from all 47 species
Zm00001e021649_P002 PDF2, Zm00001e021649 transcription factor (HD-ZIP IV) 0.06 OrthoFinder output from all 47 species
Zm00001e023786_P003 EDT1, HDG11,... transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species
Zm00001e034755_P001 HDG1, HD-GL2-1,... transcription factor (HD-ZIP IV) 0.06 OrthoFinder output from all 47 species
Zm00001e036212_P002 EDT1, HDG11,... transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
Zm00001e039947_P001 HDG2, Zm00001e039947 transcription factor (HD-ZIP IV) 0.07 OrthoFinder output from all 47 species
Zm00001e040312_P001 PDF2, Zm00001e040312 transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species
Zm00001e041695_P001 PDF2, Zm00001e041695 transcription factor (HD-ZIP IV) 0.05 OrthoFinder output from all 47 species
Zm00001e042218_P002 HDG2, Zm00001e042218 transcription factor (HD-ZIP IV) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0008289 lipid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 99 154
IPR002913 START_lipid-bd_dom 315 546
No external refs found!