LOC_Os02g47120.1 (RSH3, AT-RSH3,...)

Aliases : RSH3, AT-RSH3, ATRSH3, LOC_Os02g47120

Description : Probable GTP diphosphokinase RSH3, chloroplastic OS=Arabidopsis thaliana (sp|q9m5p5|rsh3l_arath : 125.0)

Gene families : OG0006425 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006425_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g47120.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00048p00155800	RSH3, AT-RSH3,...	Probable GTP diphosphokinase RSH3, chloroplastic...	0.04	OrthoFinder output from all 47 species
Ala_g14803	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g03228	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g06745	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene53680.t1	Aspi01Gene53680	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene53681.t1	Aspi01Gene53681	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0065.g035826	RSH3, AT-RSH3, ATRSH3	not classified & original description: CDS=635-3163	0.05	OrthoFinder output from all 47 species
Ceric.24G004600.1	AT-RSH2, ATRSH2,...	not classified & original description: pacid=50629860...	0.07	OrthoFinder output from all 47 species
Dcu_g12674	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g25362	AT-RSH2, ATRSH2, RSH2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01024422001	RSH3, AT-RSH3, ATRSH3	Probable GTP diphosphokinase RSH3, chloroplastic...	0.07	OrthoFinder output from all 47 species
Gb_38498	RSH3, AT-RSH3, ATRSH3	Probable GTP diphosphokinase RSH3, chloroplastic...	0.08	OrthoFinder output from all 47 species
Lfl_g06720	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g03900	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g15926	AT-RSH2, ATRSH2, RSH2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g16000	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g06533	AT-RSH2, ATRSH2, RSH2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e023299_P002	RSH3, AT-RSH3,...	Probable GTP diphosphokinase RSH3, chloroplastic...	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEA	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0033865	nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
BP	GO:0006284	base-excision repair	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007685	RelA_SpoT	453	571

External Links

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LOC_Os02g47120.1 (RSH3, AT-RSH3,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation