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  5. LOC_Os02g47650.1

LOC_Os02g47650.1 (RD2, LOC_Os02g47650)


Aliases : RD2, LOC_Os02g47650

Description : no hits & (original description: none)


Gene families : OG0000063 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000063_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g47650.1
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00105p00074810 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT1G09740 No alias Adenine nucleotide alpha hydrolases-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G11930 No alias Adenine nucleotide alpha hydrolases-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g042687 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g046835 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g054132 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055601 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g23564 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g00422 PHOS32, ATPHOS32 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g11697 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g00572 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g44724 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g50401 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61758 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g19247 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g40416 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g40587 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06810 RD2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08676 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08877 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13498 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g15484 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g37343 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene04016.t1 Aspi01Gene04016 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18261.t1 Aspi01Gene18261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28485.t1 Aspi01Gene28485 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene29654.t1 Aspi01Gene29654 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37518.t1 Aspi01Gene37518 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37519.t1 Aspi01Gene37519 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37521.t1 Aspi01Gene37521 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene49546.t1 Aspi01Gene49546 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene55688.t1 Aspi01Gene55688 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62788.t1 Aspi01Gene62788 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0489.g073515 No alias not classified & original description: CDS=471-992 0.03 OrthoFinder output from all 47 species
Cba_g05634 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g09601 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g27633 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29131 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g33156 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g35639 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G009300.1 Ceric.06G009300 not classified & original description: pacid=50619371... 0.03 OrthoFinder output from all 47 species
Ceric.14G013200.1 Ceric.14G013200 not classified & original description: pacid=50633294... 0.05 OrthoFinder output from all 47 species
Ceric.27G027100.1 Ceric.27G027100 not classified & original description: pacid=50605849... 0.04 OrthoFinder output from all 47 species
Dac_g03033 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g14353 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g20809 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g22195 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g26303 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g45016 RD2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g05991 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g14900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g21319 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g23687 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45675 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g00336 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g08326 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26126 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g30878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g35958 RD2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g00283 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03140 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01022496001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01023785001 RD2 No description available 0.02 OrthoFinder output from all 47 species
Gb_28753 RD2 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_32427 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os05g07810.1 LOC_Os05g07810 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g13337 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g19281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g21306 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g25137 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g48312 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54918 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g26567 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g27197 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g34167 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_100052g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10431338g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10435390g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10437265g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10838g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_108930g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_14234g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_18127g0010 RD2 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_188861g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_32640g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_720108g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Mp5g17000.1 RD2 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g00168 RD2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g07493 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g43680 No alias component *(MED19) of head module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Nbi_g10264 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g20177 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g26055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29239 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02683 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g26915 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g26979 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g54924 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g02623 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g06589 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g09177 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g20282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02626 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31529 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59165 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000709 No alias not classified & original description: CDS=1-528 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0190.g025258 No alias not classified & original description: CDS=1-597 0.02 OrthoFinder output from all 47 species
Sam_g07744 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08782 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g26935 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g109710.3.1 RD2, Solyc01g109710 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Solyc02g079410.2.1 Solyc02g079410 Universal stress protein PHOS32 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc05g054270.2.1 Solyc05g054270 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc06g009050.3.1 Solyc06g009050 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc10g086670.2.1 Solyc10g086670 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc12g099520.3.1 Solyc12g099520 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g00638 ATPHOS34, PHOS34 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g05685 RD2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14620 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g38853 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g09948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g25227 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005689_P006 Zm00001e005689 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e018234_P001 Zm00001e018234 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e025878_P001 Zm00001e025878 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e027691_P001 Zm00001e027691 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004602 glutathione peroxidase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006016 UspA 48 151
No external refs found!