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  5. LOC_Os02g52870.1

LOC_Os02g52870.1 (LOC_Os02g52870)


Aliases : LOC_Os02g52870

Description : Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana (sp|o22197|rhc1a_arath : 125.0)


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g52870.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00043520 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT1G60360 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Ehy_g00451 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g47682 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g34982 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e023806_P001 Zm00001e023806 Probable E3 ubiquitin-protein ligase RHC1A... 0.08 OrthoFinder output from all 47 species
Zm00001e030803_P001 Zm00001e030803 Probable E3 ubiquitin-protein ligase RHC1A... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR039525 RNF126-like_zinc-ribbon 19 52
IPR001841 Znf_RING 198 240
No external refs found!