Aliases : WCRKC2, LOC_Os02g53400
Description : Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica (sp|q6z7l3|trl31_orysj : 256.0)
Gene families : OG0003501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003501_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os02g53400.1 | |
| Cluster | HCCA: Cluster_53 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G06690 | WCRKC1 | WCRKC thioredoxin 1 | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene09674.t1 | WCRKC1, Aspi01Gene09674 | plastidial thioredoxin *(TrxL2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01033478001 | WCRKC2 | Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
| Gb_10427 | WCRKC2 | Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Len_g17068 | WCRKC2 | plastidial thioredoxin *(TrxL2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g09337 | WCRKC2 | plastidial thioredoxin *(TrxL2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g14724 | WCRKC1 | plastidial thioredoxin *(TrxL2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g19467 | WCRKC2 | plastidial thioredoxin *(TrxL2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g40101 | WCRKC2 | plastidial thioredoxin *(TrxL2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g31755 | WCRKC2 | plastidial thioredoxin *(TrxL2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0175.g024567 | WCRKC2 | plastidial thioredoxin *(TrxL2) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc10g078920.3.1 | WCRKC1, Solyc10g078920 | Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis... | 0.11 | OrthoFinder output from all 47 species | |
| Zm00001e016008_P002 | WCRKC1, Zm00001e016008 | Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa... | 0.08 | OrthoFinder output from all 47 species | |
| Zm00001e023777_P001 | WCRKC2, Zm00001e023777 | Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006066 | alcohol metabolic process | IEP | HCCA |
| BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
| BP | GO:0006766 | vitamin metabolic process | IEP | HCCA |
| BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | HCCA |
| BP | GO:0006772 | thiamine metabolic process | IEP | HCCA |
| BP | GO:0006790 | sulfur compound metabolic process | IEP | HCCA |
| BP | GO:0009110 | vitamin biosynthetic process | IEP | HCCA |
| BP | GO:0009228 | thiamine biosynthetic process | IEP | HCCA |
| CC | GO:0009507 | chloroplast | IEP | HCCA |
| CC | GO:0009536 | plastid | IEP | HCCA |
| MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
| MF | GO:0016868 | intramolecular transferase activity, phosphotransferases | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0034308 | primary alcohol metabolic process | IEP | HCCA |
| BP | GO:0034309 | primary alcohol biosynthetic process | IEP | HCCA |
| BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | HCCA |
| BP | GO:0042723 | thiamine-containing compound metabolic process | IEP | HCCA |
| BP | GO:0042724 | thiamine-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0044272 | sulfur compound biosynthetic process | IEP | HCCA |
| BP | GO:0046165 | alcohol biosynthetic process | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | HCCA |
| BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | HCCA |
| BP | GO:1901617 | organic hydroxy compound biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013766 | Thioredoxin_domain | 98 | 177 |
| No external refs found! |
