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  5. LOC_Os02g54340.1

LOC_Os02g54340.1 (RPT1A, LOC_Os02g54340)


Aliases : RPT1A, LOC_Os02g54340

Description : regulatory component RPT1 of 26S proteasome


Gene families : OG0004346 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004346_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os02g54340.1

Target Alias Description ECC score Gene Family Method Actions
Ceric.30G008600.1 RPT1A, Ceric.30G008600 regulatory component *(RPT1) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021464.16 RPT1A Protein degradation.26S proteasome.regulatory... 0.04 OrthoFinder output from all 47 species
Cre14.g625400 RPT1A Protein degradation.26S proteasome.regulatory... 0.06 OrthoFinder output from all 47 species
Dcu_g01171 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Gb_11942 RPT1A regulatory component RPT1 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Gb_26075 RPT1A regulatory component RPT1 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Mp2g04840.1 RPT1A regulatory component RPT1 of 26S proteasome 0.06 OrthoFinder output from all 47 species
Pp3c20_1430V3.1 RPT1A, Pp3c20_1430 regulatory particle triple-A 1A 0.02 OrthoFinder output from all 47 species
Smo146742 RPT1A Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Solyc03g123730.4.1 RPT1A, Solyc03g123730 regulatory component RPT1 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Solyc06g063140.4.1 RPT1A, Solyc06g063140 regulatory component RPT1 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Spa_g06127 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Tin_g02668 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Zm00001e023743_P001 RPT1A, Zm00001e023743 regulatory component RPT1 of 26S proteasome 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 205 337
IPR041569 AAA_lid_3 360 403
No external refs found!