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  5. LOC_Os02g56140.1

LOC_Os02g56140.1 (SPT, LOC_Os02g56140)


Aliases : SPT, LOC_Os02g56140

Description : transcription factor (bHLH)


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g56140.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00245920 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.03 OrthoFinder output from all 47 species
AT5G62610 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
Als_g34054 UNE12 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0276.g061452 No alias bHLH-type transcription factor & original description: CDS=1-1854 0.04 OrthoFinder output from all 47 species
Dac_g21654 HEC1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g00562 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02749 PIL5, PIF1 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01032055001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
Len_g00532 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g13668 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g49367 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_100071g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g48718 LRL3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44899 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e012110_P003 Zm00001e012110 transcription factor (bHLH). transcriptional regulator (CIB) 0.04 OrthoFinder output from all 47 species
Zm00001e030519_P003 Zm00001e030519 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Zm00001e030754_P001 LRL1, Zm00001e030754 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 58 104
No external refs found!