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  5. LOC_Os02g56800.1

LOC_Os02g56800.1 (AtPP2-B2, PP2-B2,...)


Aliases : AtPP2-B2, PP2-B2, LOC_Os02g56800

Description : Putative F-box protein PP2-B2 OS=Arabidopsis thaliana (sp|q9zvr5|pp2b2_arath : 84.3)


Gene families : OG0000279 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000279_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g56800.1
Cluster HCCA: Cluster_183

Target Alias Description ECC score Gene Family Method Actions
AT1G56240 PP2-B13, AtPP2-B13 phloem protein 2-B13 0.03 OrthoFinder output from all 47 species
AT1G56250 PP2-B14, AtPP2-B14 phloem protein 2-B14 0.05 OrthoFinder output from all 47 species
AT2G02300 PP2-B5, AtPP2-B5 phloem protein 2-B5 0.03 OrthoFinder output from all 47 species
AT4G19850 ATPP2-A2, PP2-A2, PP2A2 lectin-related 0.02 OrthoFinder output from all 47 species
Aev_g06546 PP2-A15, AtPP2-A15 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g01418 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04871 AtPP2-B7, PP2-B7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g49127 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene55189.t1 Aspi01Gene55189 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene55189.t2 ATPP2-A4,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0322.g064518 No alias not classified & original description: CDS=191-1105 0.04 OrthoFinder output from all 47 species
Azfi_s2399.g111181 No alias not classified & original description: CDS=192-1106 0.03 OrthoFinder output from all 47 species
Cba_g38846 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.16G068500.1 AtPP2-B1,... not classified & original description: pacid=50588978... 0.03 OrthoFinder output from all 47 species
Ceric.16G068900.1 AtPP2-B1,... not classified & original description: pacid=50589027... 0.03 OrthoFinder output from all 47 species
Dac_g17614 MEE66 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g21011 ATPP2-B11, PP2-B11 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01012084001 PP2-A1,... Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01019353001 ATPP2-A4, PP2-A4 Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os02g56810.1 AtPP2-B2,... no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os02g56820.1 MEE66, LOC_Os02g56820 F-box protein At2g02240 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os12g03594.1 AtPP2-B10,... F-box protein PP2-B10 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Lfl_g24670 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10430103g0010 AtPP2-B10, PP2-B10 F-box protein PP2-B1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10434357g0020 PP2-B15, AtPP2-B15 F-box protein PP2-B15 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_203210g0010 PP2-B15, AtPP2-B15 F-box protein PP2-B15 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_7604366g0010 AtPP2-B6, PP2-B6 F-box protein PP2-B11 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp3g22930.1 No alias F-box protein PP2-A15 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp4g13890.1 No alias Putative F-box protein PP2-B12 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp8g03620.1 AtPP2-A12, PP2-A12 F-box protein PP2-A15 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Pir_g26057 AtPP2-B1, PP2-B1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g35801 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g00534 AtPP2-B8, PP2-B8 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Solyc01g100010.3.1 PP2-B15,... F-box protein PP2-B15 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc02g069040.4.1 Solyc02g069040 Lectin OS=Luffa acutangula (sp|c0hjv2|lec_lufac : 91.7) 0.04 OrthoFinder output from all 47 species
Solyc04g050990.3.1 MEE66, Solyc04g050990 F-box protein At2g02240 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc04g056680.2.1 AtPP2-B10,... F-box protein PP2-B10 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc12g096890.1.1 AtPP2-B10,... F-box protein PP2-B10 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e000116_P001 AtPP2-A13,... component FBX of SCF E3 ubiquitin ligase complex 0.02 OrthoFinder output from all 47 species
Zm00001e023618_P002 ATPP2-B11,... Putative F-box protein PP2-B12 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Zm00001e041427_P001 AtPP2-A13,... component FBX of SCF E3 ubiquitin ligase complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004834 tryptophan synthase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006568 tryptophan metabolic process IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006586 indolalkylamine metabolic process IEP HCCA
MF GO:0008146 sulfotransferase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0042430 indole-containing compound metabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR025886 PP2-like 60 192
No external refs found!