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  5. LOC_Os02g57540.1

LOC_Os02g57540.1 (LOC_Os02g57540)


Aliases : LOC_Os02g57540

Description : component RPL28 of LSU proteome component


Gene families : OG0000910 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000910_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g57540.1
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00210210 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
AT2G19730 No alias Ribosomal L28e protein family 0.39 OrthoFinder output from all 47 species
AT4G29410 No alias Ribosomal L28e protein family 0.47 OrthoFinder output from all 47 species
Adi_g025175 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g025177 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g029567 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g073738 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Adi_g126203 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aev_g03520 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g00426 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Als_g19634 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g23593 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Als_g30166 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Aob_g04591 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aob_g35789 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g00977 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.23 OrthoFinder output from all 47 species
Aop_g41455 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g66247 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0191.g057028 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cba_g20954 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g28589 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g29799 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ceric.25G035500.1 Ceric.25G035500 component *(eL28) of large ribosomal-subunit (LSU)... 0.24 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020710.93 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.28 OrthoFinder output from all 47 species
Cre11.g467578 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.32 OrthoFinder output from all 47 species
Dac_g03084 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dac_g26158 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Dcu_g14613 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Dde_g08723 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ehy_g03161 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01016895001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.4 OrthoFinder output from all 47 species
GSVIVT01035350001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Gb_38783 No alias component RPL28 of LSU proteome component 0.2 OrthoFinder output from all 47 species
LOC_Os01g51020.1 LOC_Os01g51020 component RPL28 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Len_g16638 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g00141 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g24992 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
MA_10428490g0010 No alias component RPL28 of LSU proteome component 0.18 OrthoFinder output from all 47 species
Mp1g26940.1 No alias component RPL28 of LSU proteome component 0.26 OrthoFinder output from all 47 species
Msp_g10686 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Msp_g36633 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Msp_g38772 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Msp_g38943 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Nbi_g01990 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ore_g05983 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ore_g39103 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g03637 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Pir_g60467 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Pir_g62486 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Pp3c14_10480V3.1 Pp3c14_10480 Ribosomal L28e protein family 0.2 OrthoFinder output from all 47 species
Pp3c17_14060V3.1 Pp3c17_14060 Ribosomal L28e protein family 0.24 OrthoFinder output from all 47 species
Pp3c2_6100V3.1 Pp3c2_6100 Ribosomal L28e protein family 0.17 OrthoFinder output from all 47 species
Ppi_g19107 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ppi_g19271 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ppi_g25867 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0275.g027057 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Sam_g05292 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Sam_g05465 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g05602 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g06118 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Sam_g06119 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Sam_g14505 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g31428 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g31492 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g37199 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Sam_g43777 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g46661 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g48404 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Smo164298 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder output from all 47 species
Solyc03g121330.3.1 Solyc03g121330 component RPL28 of LSU proteome component 0.37 OrthoFinder output from all 47 species
Solyc06g062500.4.1 Solyc06g062500 component RPL28 of LSU proteome component 0.21 OrthoFinder output from all 47 species
Solyc12g044720.2.1 Solyc12g044720 component RPL28 of LSU proteome component 0.09 OrthoFinder output from all 47 species
Spa_g19251 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.22 OrthoFinder output from all 47 species
Spa_g21825 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.26 OrthoFinder output from all 47 species
Spa_g36712 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g35509 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Zm00001e026410_P001 Zm00001e026410 component RPL28 of LSU proteome component 0.36 OrthoFinder output from all 47 species
Zm00001e032283_P002 Zm00001e032283 component RPL28 of LSU proteome component 0.51 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR029004 L28e/Mak16 8 129
No external refs found!