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  5. LOC_Os03g01230.1

LOC_Os03g01230.1 (NRPE9A, NRPB9A,...)


Aliases : NRPE9A, NRPB9A, NRPD9A, LOC_Os03g01230

Description : subunit 9 of RNA polymerase


Gene families : OG0003486 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003486_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g01230.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000970.25 NRPE9A, NRPB9A, NRPD9A RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
Msp_g07334 NRPE9A, NRPB9A, NRPD9A component *(NRPE9) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e035550_P004 NRPE9A, NRPB9A,... subunit 9 of RNA polymerase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0043189 H4/H2A histone acetyltransferase complex IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1902562 H4 histone acetyltransferase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001529 DNA-dir_RNA_pol_M/15kDasu 4 33
IPR001222 Znf_TFIIS 97 135
No external refs found!