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  5. LOC_Os03g01830.1

LOC_Os03g01830.1 (LOC_Os03g01830)


Aliases : LOC_Os03g01830

Description : DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica (sp|q0dvx2|rh50_orysj : 1155.0)


Gene families : OG0004236 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004236_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g01830.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00149950 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
AT3G06980 No alias DEA(D/H)-box RNA helicase family protein 0.06 OrthoFinder output from all 47 species
Adi_g056846 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g03135 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.28G050700.1 Ceric.28G050700 not classified & original description: pacid=50570551... 0.07 OrthoFinder output from all 47 species
Cre10.g436650 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Dcu_g07014 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g22864 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01017719001 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.11 OrthoFinder output from all 47 species
Gb_19265 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Len_g02379 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g37545 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Mp8g11020.1 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Nbi_g13305 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36231 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g66303 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g33516 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005945 No alias not classified & original description: CDS=228-2279 0.04 OrthoFinder output from all 47 species
Sam_g16562 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Smo142751 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Smo403724 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Solyc11g045180.3.1 Solyc11g045180 DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Zm00001e039095_P002 Zm00001e039095 DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006072 glycerol-3-phosphate metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046168 glycerol-3-phosphate catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0052646 alditol phosphate metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 488 603
IPR011545 DEAD/DEAH_box_helicase_dom 265 438
No external refs found!