LOC_Os03g05160.1 (BME3-ZF, BME3, GATA8,...)

Aliases : BME3-ZF, BME3, GATA8, LOC_Os03g05160

Description : transcription factor (GATA)

Gene families : OG0000100 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000100_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g05160.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00011p00253850	HAN, MNP,...	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
AMTR_s00039p00112210	GATA1,...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
AMTR_s00057p00121410	GATA15,...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
AT2G28340	GATA13	GATA transcription factor 13	0.03	OrthoFinder output from all 47 species
AT3G24050	GATA1	GATA transcription factor 1	0.02	OrthoFinder output from all 47 species
AT4G32890	GATA9	GATA transcription factor 9	0.02	OrthoFinder output from all 47 species
AT5G26930	GATA23	GATA transcription factor 23	0.03	OrthoFinder output from all 47 species
Adi_g016252	GATA4	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g021303	GATA4	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g036776	GATA5	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g058312	GATA4	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g066480	GATA23	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g03153	GATA5	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g11283	GATA4	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g11812	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g20978	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g17462	GATA5	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene06728.t1	GNC, GATA21,...	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g05175	GATA9	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.04G070700.1	GATA20, Ceric.04G070700	transcription factor *(A/B-GATA) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.25G025900.1	GATA9, Ceric.25G025900	transcription factor *(A/B-GATA) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.27G027400.1	GATA12, Ceric.27G027400	transcription factor *(A/B-GATA) & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g06887	GATA2	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g15306	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g34018	GATA12	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g47461	GATA5	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g21727	GATA1	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g26819	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01016265001	BME3-ZF, BME3, GATA8	GATA transcription factor 8 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Gb_24250	GATA9	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
Gb_24639	GATA4	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
LOC_Os01g24070.1	GATA23, LOC_Os01g24070	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
LOC_Os05g44400.1	GATA12, LOC_Os05g44400	transcription factor (GATA)	0.05	OrthoFinder output from all 47 species
Len_g16587	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g18284	GATA15	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Len_g36448	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g46521	GATA5	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g28449	GATA5	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
MA_103421g0030	GATA5	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
MA_10436047g0010	GATA17	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
MA_82238g0030	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Ore_g40724	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g06393	GATA6	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g14533	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g06282	GATA5	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g53963	GNC, GATA21	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009072	GATA4	transcription factor *(A/B-GATA) & original description:...	0.05	OrthoFinder output from all 47 species
Solyc01g110310.3.1	GATA5, Solyc01g110310	transcription factor (GATA)	0.06	OrthoFinder output from all 47 species
Solyc08g066510.3.1	GATA12, Solyc08g066510	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
Solyc10g018560.2.1	GATA4, Solyc10g018560	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
Zm00001e015260_P001	GATA5, Zm00001e015260	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
Zm00001e026560_P001	GATA20, Zm00001e026560	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
Zm00001e026601_P001	GATA20, Zm00001e026601	transcription factor (GATA)	0.04	OrthoFinder output from all 47 species
Zm00001e027439_P001	GATA12, Zm00001e027439	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
Zm00001e029060_P002	GATA9, Zm00001e029060	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
Zm00001e032219_P001	GATA12, Zm00001e032219	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
Zm00001e032513_P001	Zm00001e032513	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e039468_P001	Zm00001e039468	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e039469_P001	GATA12, Zm00001e039469	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	124	157

External Links

No external refs found!

LOC_Os03g05160.1 (BME3-ZF, BME3, GATA8,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation