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  5. LOC_Os03g05730.1

LOC_Os03g05730.1 (LOC_Os03g05730)


Aliases : LOC_Os03g05730

Description : platform ATPase (CDC48)


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g05730.1
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00117380 evm_27.TU.AmTr_v1... Cell division control protein 48 homolog D... 0.02 OrthoFinder output from all 47 species
AMTR_s00085p00052820 CDC48A, CDC48,... Cell division cycle protein 48 homolog OS=Glycine max 0.04 OrthoFinder output from all 47 species
GSVIVT01025783001 CIP111 Calmodulin-interacting protein 111 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
MA_10168585g0010 No alias platform ATPase (CDC48) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 520 653
IPR003959 ATPase_AAA_core 247 376
IPR041569 AAA_lid_3 399 440
IPR041569 AAA_lid_3 675 716
IPR003338 CDC4_N-term_subdom 32 113
IPR004201 Cdc48_dom2 133 196
No external refs found!