LOC_Os03g06040.1 (LOC_Os03g06040)


Aliases : LOC_Os03g06040

Description : alpha-class expansin


Gene families : OG0000032 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g06040.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00230920 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 OrthoFinder output from all 47 species
Adi_g007240 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g007241 ATEXPA10,... alpha-class expansin & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g17361 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17605 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18902 EXPA16, ATHEXP... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g21084 ATEXPA4, ATEXP4,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g22695 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g39346 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11470 ATEXPA3, EXP3,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Als_g40485 ATEXPA10,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Als_g46764 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Als_g49200 ATEXPA4, ATEXP4,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Als_g52112 EXP9, EXPA9,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13450 ATEXPA4, ATEXP4,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g35135 ATEXPA1, EXP1,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g41940 ATEXP14, EXPA14,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g58865 ATHEXP BETA 1.4,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene14796.t1 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G020100.1 EXPB3, ATEXPB3,... not classified & original description: pacid=50577373... 0.02 OrthoFinder output from all 47 species
Ceric.06G052200.1 ATEXPA4, ATEXP4,... alpha-class expansin & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g15610 ATEXPA10,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g15611 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g02593 ATEXPA1, EXP1,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g18163 EXP9, EXPA9,... alpha-class expansin & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g19493 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g26026 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g30034 ATEXPA4, ATEXP4,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g29499 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46781 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g03276 ATHEXP BETA 1.4,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01004595001 ATHEXP BETA 3.1,... Cell wall.cell wall proteins.expansins.beta-like-type expansin 0.03 OrthoFinder output from all 47 species
Gb_09118 No alias alpha-class expansin 0.06 OrthoFinder output from all 47 species
Len_g03621 ATEXPA3, EXP3,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Len_g20899 ATEXPA1, EXP1,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Len_g43179 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Len_g59336 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
MA_10433559g0020 ATEXPA11, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
MA_10434805g0030 EXPA8, ATHEXP... alpha-class expansin 0.05 OrthoFinder output from all 47 species
MA_126777g0010 ATHEXP BETA 3.1,... Expansin-like B1 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
MA_21214g0010 EXPB3, ATEXPB3,... beta-class expansin 0.03 OrthoFinder output from all 47 species
MA_45587g0020 ATEXP7, EXPA7,... alpha-class expansin 0.03 OrthoFinder output from all 47 species
MA_61945g0010 EXPA8, ATHEXP... alpha-class expansin 0.08 OrthoFinder output from all 47 species
MA_9572318g0010 ATEXPA3, EXP3,... Expansin-A3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp1g22700.1 EXP15, ATEXPA15,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Mp1g22730.1 EXP9, EXPA9,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Mp2g18600.1 ATEXPA4, ATEXP4,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Mp3g10160.1 ATEXPA4, ATEXP4,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Mp5g01930.1 EXPA6, ATEXP6,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Msp_g23319 EXPA16, ATHEXP... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g27636 ATEXPA1, EXP1,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g43362 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g28493 ATEXPA4, ATEXP4,... alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g20451 ATEXPA10,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g27761 ATEXPA1, EXP1,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g27815 ATEXPA3, EXP3,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g33754 EXPA16, ATHEXP... alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06275 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08538 ATEXPA10,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g30056 ATEXPA4, ATEXP4,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g31444 EXPA16, ATHEXP... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g32028 ATEXPA10,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g29879 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo78615 ATEXP7, EXPA7,... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 OrthoFinder output from all 47 species
Solyc03g093390.4.1 ATHEXP BETA 1.4,... Expansin-B15 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Solyc08g007780.3.1 EXPA18, EXP18,... Putative expansin-A30 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Solyc08g080060.4.1 ATEXP7, EXPA7,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Spa_g03664 EXP15, ATEXPA15,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17657 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g37473 EXPA8, ATHEXP... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g40846 ATEXPA4, ATEXP4,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g42063 ATEXPA3, EXP3,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g42064 ATEXPA3, EXP3,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50328 ATEXPA10,... alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g03797 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000038_P001 ATHEXP BETA 1.4,... Expansin-B7 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Zm00001e002337_P001 ATHEXP BETA 1.4,... Expansin-B3 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Zm00001e004714_P001 ATEXPA11, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Zm00001e014221_P001 ATHEXP ALPHA... Expansin-A22 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Zm00001e015337_P001 ATHEXP BETA 1.1,... Expansin-B11 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007117 Expansin_CBD 155 232
IPR009009 RlpA-like_DPBB 59 144
No external refs found!