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  5. LOC_Os03g07360.1

LOC_Os03g07360.1 (CDF3, LOC_Os03g07360)


Aliases : CDF3, LOC_Os03g07360

Description : transcription factor (DOF)


Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g07360.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00213350 ADOF1, DOF1,... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AT2G28510 No alias Dof-type zinc finger DNA-binding family protein 0.06 OrthoFinder output from all 47 species
AT2G28810 No alias Dof-type zinc finger DNA-binding family protein 0.05 OrthoFinder output from all 47 species
AT5G60850 OBP4 OBF binding protein 4 0.04 OrthoFinder output from all 47 species
AT5G62430 CDF1 cycling DOF factor 1 0.05 OrthoFinder output from all 47 species
Adi_g007049 CDF2 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g012791 CDF3 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g050522 No alias transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g075098 No alias transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g03761 TMO6 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16400 TMO6 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01888 CDF3 transcription factor *(DOF) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g04849 TMO6 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20563 ADOF1, DOF1 transcription factor *(DOF) & original description: none 0.07 OrthoFinder output from all 47 species
Als_g27376 No alias transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g51755 No alias transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g18876 TMO6 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37574.t1 OBP3, Aspi01Gene37574 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0054.g033832 CDF3 transcription factor *(DOF) & original description: CDS=354-1853 0.03 OrthoFinder output from all 47 species
Azfi_s1074.g096912 TMO6 transcription factor *(DOF) & original description: CDS=1-1176 0.03 OrthoFinder output from all 47 species
Azfi_s4159.g118156 TMO6 transcription factor *(DOF) & original description: CDS=1-876 0.03 OrthoFinder output from all 47 species
Cba_g11407 No alias transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g24216 ADOF1, DOF1 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g57567 No alias transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G055200.1 TMO6, Ceric.09G055200 transcription factor *(DOF) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.12G042700.1 TMO6, Ceric.12G042700 transcription factor *(DOF) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.30G042800.1 OBP3, Ceric.30G042800 transcription factor *(DOF) & original description:... 0.03 OrthoFinder output from all 47 species
Cre12.g521150 CDF2 RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
Dac_g02618 TMO6 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g40320 TMO6 transcription factor *(DOF) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02219 ADOF1, DOF1 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02221 TMO6 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25853 TMO6 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26721 No alias transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07699 CDF3 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12302 CDF3 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01005057001 TMO6 RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
GSVIVT01007992001 CDF1 RNA biosynthesis.transcriptional activation.C2C2... 0.05 OrthoFinder output from all 47 species
GSVIVT01016538001 OBP3 RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
GSVIVT01019619001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
GSVIVT01024986001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
LOC_Os01g64590.1 LOC_Os01g64590 transcription factor (DOF) 0.05 OrthoFinder output from all 47 species
LOC_Os03g38870.1 LOC_Os03g38870 transcription factor (DOF) 0.1 OrthoFinder output from all 47 species
LOC_Os03g60630.1 LOC_Os03g60630 transcription factor (DOF) 0.05 OrthoFinder output from all 47 species
LOC_Os04g47990.1 LOC_Os04g47990 transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
Len_g10091 TMO6 transcription factor *(DOF) & original description: none 0.04 OrthoFinder output from all 47 species
MA_46520g0010 No alias transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Mp2g20790.1 TMO6 transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
Msp_g15852 No alias transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g16351 OBP4 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17212 OBP3 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42354 ADOF1, DOF1 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10327 No alias transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14293 No alias transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18526 TMO6 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g24818 No alias transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19752 OBP4 transcription factor *(DOF) & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g09266 No alias transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53532 TMO6 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012148 ADOF1, DOF1 transcription factor *(DOF) & original description: CDS=1-1128 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0104.g020125 No alias transcription factor *(DOF) & original description: CDS=124-2595 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0156.g023637 CDF3 transcription factor *(DOF) & original description: CDS=1-1434 0.02 OrthoFinder output from all 47 species
Sam_g36281 No alias transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50151 No alias transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g077950.3.1 Solyc02g077950 transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Solyc02g077960.3.1 TMO6, Solyc02g077960 transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
Solyc02g090220.3.1 OBP1, Solyc02g090220 transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Solyc05g007880.4.1 CDF1, Solyc05g007880 Cyclic dof factor 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc05g054510.2.1 OBP3, Solyc05g054510 transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Solyc06g062520.1.1 ADOF1, DOF1,... transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Solyc06g069760.3.1 CDF3, Solyc06g069760 transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
Solyc06g071480.3.1 HCA2, DOF5.6,... transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Spa_g05594 TMO6 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49511 TMO6 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54524 TMO6 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g20763 CDF3 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g23610 TMO6 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000526_P001 CDF3, Zm00001e000526 transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
Zm00001e001988_P001 TMO6, Zm00001e001988 transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
Zm00001e005785_P001 ADOF2, DOF2,... transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
Zm00001e006190_P001 Zm00001e006190 transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
Zm00001e007228_P002 Zm00001e007228 transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Zm00001e009303_P001 TMO6, Zm00001e009303 transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
Zm00001e010454_P001 TMO6, Zm00001e010454 transcription factor (DOF) 0.05 OrthoFinder output from all 47 species
Zm00001e012437_P001 ADOF1, DOF1,... transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Zm00001e015414_P004 Zm00001e015414 transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Zm00001e015597_P001 HCA2, DOF5.6,... transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
Zm00001e019172_P001 Zm00001e019172 transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Zm00001e023218_P004 Zm00001e023218 transcription factor (DOF) 0.05 OrthoFinder output from all 47 species
Zm00001e035074_P001 TMO6, Zm00001e035074 transcription factor (DOF) 0.05 OrthoFinder output from all 47 species
Zm00001e041444_P001 Zm00001e041444 transcription factor (DOF) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR003851 Znf_Dof 104 160
No external refs found!