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  5. LOC_Os03g07530.1

LOC_Os03g07530.1 (LOC_Os03g07530)


Aliases : LOC_Os03g07530

Description : F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana (sp|q8l736|ski11_arath : 452.0)


Gene families : OG0000497 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g07530.1
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00225330 evm_27.TU.AmTr_v1... F-box/kelch-repeat protein At3g27150 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00175p00042660 evm_27.TU.AmTr_v1... F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT2G02870 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g021774 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Adi_g060036 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Adi_g080527 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Adi_g082428 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Aev_g09885 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ala_g24215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18445 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Aob_g01346 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Aob_g07345 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Aspi01Gene01907.t1 Aspi01Gene01907 substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Aspi01Gene47338.t1 Aspi01Gene47338 substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Azfi_s0045.g029803 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ceric.34G061900.1 Ceric.34G061900 substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Dcu_g04688 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Dde_g06004 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ehy_g15525 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
GSVIVT01020023001 No alias F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
GSVIVT01025174001 No alias F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Lfl_g06999 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Msp_g01177 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Nbi_g01053 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Pir_g09525 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Pnu_g19999 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010089 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015191 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015762 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017403 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Sam_g09345 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Sam_g10982 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Smo14013 No alias F-box/kelch-repeat protein At3g27150 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Smo33540 No alias F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc04g005670.3.1 Solyc04g005670 F-box/kelch-repeat protein SKIP11 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc11g069320.1.1 Solyc11g069320 F-box/kelch-repeat protein At5g60570 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g06022 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Tin_g00944 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquiTin ligase... 0.02 OrthoFinder output from all 47 species
Zm00001e023895_P005 Zm00001e023895 F-box/kelch-repeat protein At1g74510 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e038898_P001 Zm00001e038898 F-box/kelch-repeat protein SKIP11 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006652 Kelch_1 222 268
IPR006652 Kelch_1 270 316
No external refs found!