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  5. LOC_Os03g07940.1

LOC_Os03g07940.1 (LOC_Os03g07940)


Aliases : LOC_Os03g07940

Description : transcription factor (AP2)


Gene families : OG0000110 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g07940.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00086450 ADAP,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AMTR_s00066p00028460 BBM,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 OrthoFinder output from all 47 species
AT1G72570 No alias Integrase-type DNA-binding superfamily protein 0.07 OrthoFinder output from all 47 species
AT3G20840 PLT1 Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G54320 WRI1, ATWRI1, ASML1, WRI Integrase-type DNA-binding superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G54990 SMZ Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G10510 PLT3, AIL6 AINTEGUMENTA-like 6 0.03 OrthoFinder output from all 47 species
AT5G17430 BBM Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G57390 AIL5, EMK, CHO1 AINTEGUMENTA-like 5 0.04 OrthoFinder output from all 47 species
AT5G67180 TOE3 target of early activation tagged (EAT) 3 0.02 OrthoFinder output from all 47 species
Adi_g014885 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Adi_g030001 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Adi_g056777 WRI1, ATWRI1, ASML1, WRI AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Adi_g088509 WRI1, ATWRI1, ASML1, WRI AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Adi_g088510 WRI1, ATWRI1, ASML1, WRI not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g09099 RAP2.7, TOE1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g33374 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Aob_g21593 No alias RAM1-dependent transcription factor *(WRI5) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene04754.t1 Aspi01Gene04754 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene38120.t1 PLT2, Aspi01Gene38120 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0072.g037000 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0207.g057931 WRI1, ATWRI1, ASML1, WRI AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Ceric.03G029300.1 BBM, Ceric.03G029300 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Ceric.10G056100.1 PLT2, Ceric.10G056100 AP2-type transcription factor *(WRI/AIL) & original... 0.01 OrthoFinder output from all 47 species
Ceric.10G056200.1 PLT2, Ceric.10G056200 AP2-type transcription factor *(WRI/AIL) & original... 0.07 OrthoFinder output from all 47 species
Ceric.14G068200.1 AP2, FLO2, FL1,... AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ceric.15G054600.1 PLT2, Ceric.15G054600 AP2-type transcription factor *(WRI/AIL) & original... 0.04 OrthoFinder output from all 47 species
Ceric.26G003300.1 PLT2, Ceric.26G003300 AP2-type transcription factor *(WRI/AIL) & original... 0.05 OrthoFinder output from all 47 species
Ceric.32G008600.1 BBM, Ceric.32G008600 AP2-type transcription factor *(WRI/AIL) & original... 0.04 OrthoFinder output from all 47 species
Cre08.g385350 HRE1 No description available 0.01 OrthoFinder output from all 47 species
Dac_g06510 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Dac_g35453 ADAP RAM1-dependent transcription factor *(WRI5) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g31669 ADAP AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g33754 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g41387 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g18636 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01002536001 PLT3, AIL6 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.07 OrthoFinder output from all 47 species
GSVIVT01016097001 ADAP RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
GSVIVT01016352001 RAP2.7, TOE1 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
GSVIVT01022081001 AP2, FLO2, FL1 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
GSVIVT01027345001 WRI1, ATWRI1, ASML1, WRI RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 OrthoFinder output from all 47 species
Gb_24420 AIL5, EMK, CHO1 transcription factor (AP2) 0.02 OrthoFinder output from all 47 species
Gb_29561 No alias transcription factor (AP2) 0.02 OrthoFinder output from all 47 species
LOC_Os01g59780.1 WRI1, ATWRI1,... transcription factor (AP2) 0.03 OrthoFinder output from all 47 species
LOC_Os03g60430.2 AP2, FLO2, FL1,... transcription factor (AP2) 0.03 OrthoFinder output from all 47 species
LOC_Os06g05340.1 LOC_Os06g05340 transcription factor (AP2). RAM1-dependent transcription... 0.04 OrthoFinder output from all 47 species
LOC_Os07g13170.2 RAP2.7, TOE1,... transcription factor (AP2) 0.03 OrthoFinder output from all 47 species
LOC_Os08g34360.1 LOC_Os08g34360 transcription factor (AP2) 0.03 OrthoFinder output from all 47 species
Len_g46832 ADAP AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g17116 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.04 OrthoFinder output from all 47 species
Lfl_g29068 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.05 OrthoFinder output from all 47 species
MA_10005612g0010 ADAP no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_113625g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_196219g0010 AIL5, EMK, CHO1 transcription factor (AP2) 0.05 OrthoFinder output from all 47 species
MA_86195g0010 PLT2 transcription factor (AP2) 0.05 OrthoFinder output from all 47 species
MA_95471g0010 No alias transcription factor (AP2) 0.02 OrthoFinder output from all 47 species
MA_98095g0010 No alias transcription factor (AP2) 0.02 OrthoFinder output from all 47 species
Mp7g13270.1 ADAP transcription factor (AP2) 0.02 OrthoFinder output from all 47 species
Msp_g18324 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28024 BBM AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Msp_g31091 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Msp_g39406 No alias RAM1-dependent transcription factor *(WRI5) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g09452 BBM AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g44270 WRI1, ATWRI1, ASML1, WRI RAM1-dependent transcription factor *(WRI5) & original... 0.03 OrthoFinder output from all 47 species
Ore_g26951 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ore_g35099 WRI1, ATWRI1, ASML1, WRI not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g24109 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Pir_g41422 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.01 OrthoFinder output from all 47 species
Pnu_g21617 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g23616 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Pp3c22_17870V3.1 Pp3c22_17870 target of early activation tagged (EAT) 2 0.01 OrthoFinder output from all 47 species
Ppi_g45371 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g59880 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Solyc02g064960.3.1 AP2, FLO2, FL1,... transcription factor (AP2) 0.01 OrthoFinder output from all 47 species
Solyc03g044300.3.1 AP2, FLO2, FL1,... transcription factor (AP2) 0.04 OrthoFinder output from all 47 species
Solyc11g008560.2.1 BBM, Solyc11g008560 transcription factor (AP2) 0.05 OrthoFinder output from all 47 species
Solyc11g061750.2.1 PLT2, Solyc11g061750 transcription factor (AP2) 0.04 OrthoFinder output from all 47 species
Spa_g28499 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g38473 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Tin_g10568 BBM AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Tin_g12768 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e005817_P003 DRG, CKC, CKC1,... transcription factor (AP2) 0.04 OrthoFinder output from all 47 species
Zm00001e006752_P001 AP2, FLO2, FL1,... transcription factor (AP2) 0.03 OrthoFinder output from all 47 species
Zm00001e015104_P001 PLT2, Zm00001e015104 transcription factor (AP2) 0.07 OrthoFinder output from all 47 species
Zm00001e018951_P001 PLT2, Zm00001e018951 transcription factor (AP2) 0.08 OrthoFinder output from all 47 species
Zm00001e024044_P002 WRI1, ATWRI1,... transcription factor (AP2) 0.02 OrthoFinder output from all 47 species
Zm00001e027593_P003 AP2, FLO2, FL1,... transcription factor (AP2) 0.03 OrthoFinder output from all 47 species
Zm00001e032754_P003 DRG, CKC, CKC1,... transcription factor (AP2) 0.03 OrthoFinder output from all 47 species
Zm00001e037696_P002 PLT2, Zm00001e037696 transcription factor (AP2) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004556 alpha-amylase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 220 269
No external refs found!