1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g12820.1

LOC_Os03g12820.1 (SRO2, LOC_Os03g12820)


Aliases : SRO2, LOC_Os03g12820

Description : Probable inactive poly [ADP-ribose] polymerase SRO2 OS=Arabidopsis thaliana (sp|q9zud9|sro2_arath : 144.0)


Gene families : OG0000733 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000733_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g12820.1
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Adi_g009409 AtRCD1, RCD1,... organellar-signalling mediator *(RCD1) & original... 0.03 OrthoFinder output from all 47 species
Adi_g025909 No alias organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
Adi_g056116 AtRCD1, RCD1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g14528 AtRCD1, RCD1,... organellar-signalling mediator *(RCD1) & original... 0.04 OrthoFinder output from all 47 species
Aop_g13526 SRO1 organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene39617.t1 AtRCD1, RCD1,... organellar-signalling mediator *(RCD1) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0531.g075843 SRO2 not classified & original description: CDS=497-1708 0.03 OrthoFinder output from all 47 species
Cba_g78441 AtRCD1, RCD1,... organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.01G095500.1 AtRCD1, RCD1,... organellar-signalling mediator *(RCD1) & original... 0.03 OrthoFinder output from all 47 species
Ceric.15G016700.1 AtRCD1, RCD1,... organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.35G050900.1 SRO1, Ceric.35G050900 organellar-signalling mediator *(RCD1) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g02762 AtRCD1, RCD1,... organellar-signalling mediator *(RCD1) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01009262001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_33339 SRO1 Probable inactive poly [ADP-ribose] polymerase SRO1... 0.04 OrthoFinder output from all 47 species
Len_g20718 SRO3 organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
Mp5g18990.1 No alias Probable inactive poly [ADP-ribose] polymerase SRO3... 0.04 OrthoFinder output from all 47 species
Msp_g03984 AtRCD1, RCD1,... organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g25860 AtRCD1, RCD1,... organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g31243 SRO1 organellar-signalling mediator *(RCD1) & original... 0.04 OrthoFinder output from all 47 species
Solyc05g005290.4.1 SRO2, Solyc05g005290 Probable inactive poly [ADP-ribose] polymerase SRO2... 0.05 OrthoFinder output from all 47 species
Solyc08g076420.3.1 AtRCD1, RCD1,... Inactive poly [ADP-ribose] polymerase RCD1... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR022003 RST 401 461
No external refs found!