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  5. LOC_Os03g20190.1

LOC_Os03g20190.1 (LOC_Os03g20190)


Aliases : LOC_Os03g20190

Description : Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana (sp|q9fxb9|ppr84_arath : 828.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g20190.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00098p00167700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g50390,... 0.02 OrthoFinder output from all 47 species
AT1G77150 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from all 47 species
AT2G33760 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from all 47 species
AT3G14730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g018966 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099122 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37465 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g03970 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16829 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26568 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07268 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g39237 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g09923 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22823 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g30166 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36880 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g42153 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23475 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34523.t1 Aspi01Gene34523 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05443 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06580 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07724 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12399 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20235 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29529 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g56780 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75092 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G054700.1 Ceric.02G054700 not classified & original description: pacid=50584211... 0.02 OrthoFinder output from all 47 species
Ceric.28G037300.1 Ceric.28G037300 not classified & original description: pacid=50570602... 0.03 OrthoFinder output from all 47 species
Dac_g00755 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07839 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21468 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g26848 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g26851 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38836 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g05943 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g06677 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g23401 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_29557 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Len_g05348 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g05426 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g07790 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g12790 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18512 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18578 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g26311 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g40700 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07126 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07842 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g13328 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g13483 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g15230 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28512 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g37918 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g34529 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57985 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25238 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06858 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16308 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18809 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g22233 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g49399 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61597 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63671 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000724 No alias not classified & original description: CDS=90-728 0.02 OrthoFinder output from all 47 species
Sam_g28767 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38610 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39881 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo110549 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Tin_g13647 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g26634 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g28558 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g43664 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g46234 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 371 392
IPR002885 Pentatricopeptide_repeat 269 296
IPR002885 Pentatricopeptide_repeat 113 142
IPR002885 Pentatricopeptide_repeat 300 329
IPR002885 Pentatricopeptide_repeat 50 78
IPR002885 Pentatricopeptide_repeat 206 235
IPR002885 Pentatricopeptide_repeat 472 497
IPR002885 Pentatricopeptide_repeat 237 265
IPR032867 DYW_dom 571 696
IPR002885 Pentatricopeptide_repeat 397 444
IPR002885 Pentatricopeptide_repeat 173 205
No external refs found!