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  5. LOC_Os03g29810.1

LOC_Os03g29810.1 (CLPP6, NCLPP1,...)


Aliases : CLPP6, NCLPP1, NCLPP6, LOC_Os03g29810

Description : proteolytic core component ClpP1/3-6 of chloroplast Clp-type protease complex


Gene families : OG0006579 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006579_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g29810.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g021569 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
Aev_g28889 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
Als_g13136 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Aop_g14482 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Aspi01Gene53023.t1 CLPP6, NCLPP1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g02386 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Ceric.1Z076900.1 CLPP6, NCLPP1,... proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
Cre06.g299650 NCLPP1, CLPP5, NCLPP5 ATP-dependent Clp protease proteolytic subunit 6,... 0.02 OrthoFinder output from all 47 species
Dac_g04527 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Ehy_g00383 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
GSVIVT01031936001 CLPP6, NCLPP1, NCLPP6 Protein degradation.peptidase families.serine-type... 0.04 OrthoFinder output from all 47 species
Gb_39858 CLPP6, NCLPP1, NCLPP6 proteolytic core component ClpP1/3-6 of chloroplast... 0.09 OrthoFinder output from all 47 species
Len_g09909 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Lfl_g05845 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Mp4g17530.1 CLPP6, NCLPP1, NCLPP6 proteolytic core component ClpP1/3-6 of chloroplast... 0.1 OrthoFinder output from all 47 species
Msp_g02713 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015340 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
Sam_g07340 No alias proteolytic core component *(ClpP1/3-6) of chloroplast... 0.04 OrthoFinder output from all 47 species
Sam_g40789 No alias proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
Solyc10g051310.2.1 CLPP6, NCLPP1,... proteolytic core component ClpP1/3-6 of chloroplast... 0.07 OrthoFinder output from all 47 species
Spa_g00289 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.04 OrthoFinder output from all 47 species
Tin_g13624 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Tin_g31246 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Zm00001e016157_P003 CLPP6, NCLPP1,... proteolytic core component ClpP1/3-6 of chloroplast... 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR023562 ClpP/TepA 83 257
No external refs found!