Aliases : COBL1, LOC_Os03g30260
Description : COB cellulose microfibrils and hemicellulose interaction protein
Gene families : OG0000498 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000498_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os03g30260.1 | |
| Cluster | HCCA: Cluster_95 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00041p00228050 | COBL1,... | Cell wall.cellulose.synthesis.cellulose microfibrils and... | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g02340 | COB | regulatory protein *(COB) of cellulose-hemicellulose... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0068.g036477 | COBL2 | regulatory protein *(COB) of cellulose-hemicellulose... | 0.05 | OrthoFinder output from all 47 species | |
| Dac_g00727 | COB | regulatory protein *(COB) of cellulose-hemicellulose... | 0.05 | OrthoFinder output from all 47 species | |
| Ehy_g09126 | SEB1, COBL7, ATSEB1 | regulatory protein *(COB) of cellulose-hemicellulose... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g12791 | COB | regulatory protein *(COB) of cellulose-hemicellulose... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01012641001 | COBL10 | Cell wall.cellulose.synthesis.cellulose microfibrils and... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os04g45700.1 | COBL6, LOC_Os04g45700 | COB cellulose microfibrils and hemicellulose interaction protein | 0.05 | OrthoFinder output from all 47 species | |
| Len_g43876 | COBL1 | regulatory protein *(COB) of cellulose-hemicellulose... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g06176 | SEB1, COBL7, ATSEB1 | regulatory protein *(COB) of cellulose-hemicellulose... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g07759 | COB | regulatory protein *(COB) of cellulose-hemicellulose... | 0.03 | OrthoFinder output from all 47 species | |
| MA_40967g0020 | COB | COB cellulose microfibrils and hemicellulose interaction protein | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g06151 | COBL2 | regulatory protein *(COB) of cellulose-hemicellulose... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g070440.4.1 | IRX6, COBL4,... | COB cellulose microfibrils and hemicellulose interaction protein | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g08777 | COBL2 | regulatory protein *(COB) of cellulose-hemicellulose... | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g29852 | COBL2 | regulatory protein *(COB) of cellulose-hemicellulose... | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0010215 | cellulose microfibril organization | IEA | Interproscan |
| CC | GO:0031225 | obsolete anchored component of membrane | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003968 | RNA-dependent RNA polymerase activity | IEP | HCCA |
| MF | GO:0004180 | carboxypeptidase activity | IEP | HCCA |
| MF | GO:0004185 | serine-type carboxypeptidase activity | IEP | HCCA |
| MF | GO:0004527 | exonuclease activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| BP | GO:0007275 | multicellular organism development | IEP | HCCA |
| MF | GO:0008236 | serine-type peptidase activity | IEP | HCCA |
| MF | GO:0008238 | exopeptidase activity | IEP | HCCA |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0017171 | serine hydrolase activity | IEP | HCCA |
| BP | GO:0032501 | multicellular organismal process | IEP | HCCA |
| BP | GO:0032502 | developmental process | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
| BP | GO:0048856 | anatomical structure development | IEP | HCCA |
| MF | GO:0070008 | serine-type exopeptidase activity | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR006918 | COBRA_pln | 53 | 217 |
| No external refs found! |
