LOC_Os03g38740.1 (ATDCL2, DCL2, LOC_Os03g38740)

Aliases : ATDCL2, DCL2, LOC_Os03g38740

Description : Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica (sp|q10hl3|dcl2a_orysj : 2852.0)

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g38740.1

Target	Alias	Description	ECC score	Gene Family Method
AT4G15417	ATRTL1, RTL1	RNAse II-like 1	0.03	OrthoFinder output from all 47 species
AT5G45150	RTL3	RNAse THREE-like protein 3	0.02	OrthoFinder output from all 47 species
Dac_g32180	DCL1, CAF,...	endoribonuclease *(DCL3) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01030481001	ATRTL1, RTL1	Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder output from all 47 species
MA_10434435g0010	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Mp7g16380.1	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Ore_g19703	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.03	OrthoFinder output from all 47 species
Ppi_g45378	DCL1, CAF,...	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Solyc05g024210.1.1	ATRTL1, RTL1,...	Ribonuclease 3-like protein 3 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Solyc10g005125.1.1	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Solyc11g008530.3.1	ATDCL2, DCL2,...	Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEA	Interproscan
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004866	endopeptidase inhibitor activity	IEP	HCCA
MF	GO:0004869	cysteine-type endopeptidase inhibitor activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
MF	GO:0030414	peptidase inhibitor activity	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0061134	peptidase regulator activity	IEP	HCCA
MF	GO:0061135	endopeptidase regulator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	385	499
IPR000999	RNase_III_dom	1197	1307
IPR000999	RNase_III_dom	1006	1123
IPR003100	PAZ_dom	832	965
IPR011545	DEAD/DEAH_box_helicase_dom	37	204
IPR005034	Dicer_dimerisation_dom	569	648

External Links

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LOC_Os03g38740.1 (ATDCL2, DCL2, LOC_Os03g38740)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation