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  5. LOC_Os03g47800.1

LOC_Os03g47800.1 (ATRZ-1A, LOC_Os03g47800)


Aliases : ATRZ-1A, LOC_Os03g47800

Description : RNA chaperone (RZ1|GR-RBP)


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g47800.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g013124 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034694 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g083735 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107607 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05447 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene35297.t1 GRP2, ATGRP2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06390 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.30G044500.1 Ceric.30G044500 RNA chaperone *(RZ1) & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g03970 GR-RBP5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08529 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_18168 GR-RBP3 RNA editing factor (ORRM) 0.02 OrthoFinder output from all 47 species
LOC_Os10g17454.1 GR-RBP3, LOC_Os10g17454 RNA editing factor (ORRM) 0.03 OrthoFinder output from all 47 species
Len_g22331 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g15237 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g33177 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g33178 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g05599 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0112.g020723 No alias not classified & original description: CDS=1-762 0.02 OrthoFinder output from all 47 species
Sam_g10757 No alias RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14736 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35045 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo81392 GRP2, ATGRP2, GR-RBP2 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Solyc03g071560.4.1 Solyc03g071560 RNA chaperone (RZ1|GR-RBP) 0.04 OrthoFinder output from all 47 species
Solyc11g008210.3.1 Solyc11g008210 Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g46397 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005260_P002 Zm00001e005260 RNA chaperone (RZ1|GR-RBP) 0.07 OrthoFinder output from all 47 species
Zm00001e012278_P001 Zm00001e012278 RNA chaperone (RZ1|GR-RBP) 0.04 OrthoFinder output from all 47 species
Zm00001e033010_P001 Zm00001e033010 RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 78
IPR001878 Znf_CCHC 115 131
No external refs found!