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  5. LOC_Os03g48850.1

LOC_Os03g48850.1 (VALRS, TWN2, LOC_Os03g48850)


Aliases : VALRS, TWN2, LOC_Os03g48850

Description : valine-tRNA ligase


Gene families : OG0001685 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001685_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g48850.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00088230 VALRS, TWN2,... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.04 OrthoFinder output from all 47 species
AT1G14610 VALRS, TWN2 valyl-tRNA synthetase / valine--tRNA ligase (VALRS) 0.11 OrthoFinder output from all 47 species
Adi_g054739 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Ala_g11536 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.06 OrthoFinder output from all 47 species
Als_g14687 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Aop_g64058 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0114.g046119 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Cba_g03395 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Ceric.12G097300.1 VALRS, TWN2,... EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000402.37 EMB2247 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001130.5 VALRS, TWN2 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.01 OrthoFinder output from all 47 species
Cre07.g350500 EMB2247 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
Cre12.g537100 VALRS, TWN2 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.04 OrthoFinder output from all 47 species
Dac_g01783 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Dcu_g09644 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.05 OrthoFinder output from all 47 species
Dde_g26392 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01010632001 VALRS, TWN2 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.1 OrthoFinder output from all 47 species
Gb_09296 VALRS, TWN2 valine-tRNA ligase 0.06 OrthoFinder output from all 47 species
Len_g32324 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Lfl_g09029 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
MA_10426363g0020 VALRS, TWN2 valine-tRNA ligase 0.07 OrthoFinder output from all 47 species
MA_583090g0010 VALRS, TWN2 Valine--tRNA ligase, mitochondrial 1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Mp4g09690.1 VALRS, TWN2 valine-tRNA ligase 0.02 OrthoFinder output from all 47 species
Msp_g01242 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Nbi_g34796 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Ore_g19681 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Ppi_g33649 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Sam_g10604 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.05 OrthoFinder output from all 47 species
Smo141956 VALRS, TWN2 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.08 OrthoFinder output from all 47 species
Solyc09g007540.3.1 VALRS, TWN2,... valine-tRNA ligase 0.11 OrthoFinder output from all 47 species
Spa_g12844 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.09 OrthoFinder output from all 47 species
Tin_g05237 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.05 OrthoFinder output from all 47 species
Zm00001e010301_P002 VALRS, TWN2,... valine-tRNA ligase 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004826 phenylalanine-tRNA ligase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR002300 aa-tRNA-synth_Ia 105 725
IPR013155 M/V/L/I-tRNA-synth_anticd-bd 770 910
No external refs found!