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  5. LOC_Os03g49880.1

LOC_Os03g49880.1 (TCP12, BRC2, LOC_Os03g49880)


Aliases : TCP12, BRC2, LOC_Os03g49880

Description : transcription factor (TCP)


Gene families : OG0000529 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000529_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g49880.1
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00158020 TCP4, MEE35,... RNA biosynthesis.transcriptional activation.TCP... 0.04 OrthoFinder output from all 47 species
AT5G60970 TCP5 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 0.04 OrthoFinder output from all 47 species
Aev_g30836 TCP10 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene55158.t1 TCP5, Aspi01Gene55158 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012107 ATTCP24, TCP24 TCP-type transcription factor & original description: CDS=1-672 0.03 OrthoFinder output from all 47 species
Cba_g37204 TCP2 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.27G008200.1 TCP17, Ceric.27G008200 TCP-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Dde_g13231 TCP3 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008109001 TCP5 RNA biosynthesis.transcriptional activation.TCP... 0.04 OrthoFinder output from all 47 species
GSVIVT01021167001 TCP3 RNA biosynthesis.transcriptional activation.TCP... 0.02 OrthoFinder output from all 47 species
GSVIVT01021528001 ATTCP24, TCP24 RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
Gb_07891 ATTCP24, TCP24 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Gb_30049 TCP2 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
LOC_Os01g55750.1 TCP5, LOC_Os01g55750 transcription factor (TCP) 0.05 OrthoFinder output from all 47 species
Lfl_g07001 TCP10 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_3891g0010 TCP13, TFPD, PTF1 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
MA_49143g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_78665g0010 TCP2 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Nbi_g10533 ATTCP24, TCP24 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g04093 TCP13, TFPD, PTF1 TCP-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g25790 TCP2 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26630 TCP2 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26727 TCP13, TFPD, PTF1 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g02212 TCP3 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g077250.2.1 TCP4, MEE35,... transcription factor (TCP) 0.05 OrthoFinder output from all 47 species
Solyc03g045030.2.1 TCP12, BRC2,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc03g119770.4.1 TCP12, BRC2,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc06g069240.2.1 TCP12, BRC2,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc07g053410.4.1 TCP4, MEE35,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Tin_g03446 TCP3 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005407_P001 TCP12, BRC2,... transcription factor (TCP) 0.12 OrthoFinder output from all 47 species
Zm00001e005909_P001 TCP2, Zm00001e005909 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Zm00001e009811_P001 BRC1, ATTCP18,... transcription factor (TCP) 0.08 OrthoFinder output from all 47 species
Zm00001e011911_P001 ATTCP24, TCP24,... transcription factor (TCP) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 114 270
No external refs found!