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  5. LOC_Os03g50560.1

LOC_Os03g50560.1 (LOC_Os03g50560)


Aliases : LOC_Os03g50560

Description : Binding partner of ACD11 1 OS=Arabidopsis thaliana (sp|q9lfd5|bpa1_arath : 199.0)


Gene families : OG0000642 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000642_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g50560.1
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00138p00027500 evm_27.TU.AmTr_v1... Binding partner of ACD11 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT5G16840 BPA1 binding partner of acd11 1 0.02 OrthoFinder output from all 47 species
AT5G32450 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Adi_g022185 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g115931 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aev_g16560 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14819 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22163 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11474 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g19115 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g21309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01201 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37925 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g03086 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene57383.t1 Aspi01Gene57383 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0130.g049026 No alias not classified & original description: CDS=251-1009 0.05 OrthoFinder output from all 47 species
Ceric.05G062300.1 Ceric.05G062300 not classified & original description: pacid=50578128... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000058.8 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g13809 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g07449 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g46647 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23747 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g04385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19804 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01011624001 No alias Binding partner of ACD11 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01022464001 No alias Binding partner of ACD11 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
LOC_Os11g34680.1 LOC_Os11g34680 Binding partner of ACD11 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Len_g55926 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g03642 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g01572 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g27405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30567 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g00654 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g07486 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g11660 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc10g076890.3.1 Solyc10g076890 Binding partner of ACD11 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Spa_g04495 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g38160 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05834 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005469_P003 Zm00001e005469 Binding partner of ACD11 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e012039_P002 Zm00001e012039 Binding partner of ACD11 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e036683_P001 Zm00001e036683 Binding partner of ACD11 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0005484 SNAP receptor activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 7 69
No external refs found!