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  5. LOC_Os03g51710.1

LOC_Os03g51710.1 (BP, BP1, KNAT1, LOC_Os03g51710)


Aliases : BP, BP1, KNAT1, LOC_Os03g51710

Description : transcription factor (KNOX)


Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g51710.1
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00026p00162850 KNAT3,... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
AMTR_s00085p00165180 KNAT6, KNAT6L,... RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.03 OrthoFinder output from all 47 species
AT1G70510 KNAT2, ATK1 KNOTTED-like from Arabidopsis thaliana 2 0.06 OrthoFinder output from all 47 species
AT5G25220 KNAT3 KNOTTED1-like homeobox gene 3 0.03 OrthoFinder output from all 47 species
Adi_g019967 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058539 KNAT6, KNAT6L, KNAT6S KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060986 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g16413 KNAT4 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05964 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g02808 No alias KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15588 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16044 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g31921 KNAT4 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22220 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g27530 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene09486.t1 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49428.t1 KNAT3, Aspi01Gene49428 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene56442.t2 KNAT3, Aspi01Gene56442 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000431 KNAT7, IXR11 KNOX-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009595 BUM1, SHL, STM,... KNOX-type transcription factor & original description: CDS=1-1050 0.04 OrthoFinder output from all 47 species
Azfi_s0350.g066569 BUM1, SHL, STM,... KNOX-type transcription factor & original description: CDS=1-1488 0.03 OrthoFinder output from all 47 species
Cba_g09026 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.13G020400.1 KNAT3, Ceric.13G020400 KNOX-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.20G046300.1 BUM1, SHL, STM,... KNOX-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g03334 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g48747 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007715001 KNAT6, KNAT6L, KNAT6S RNA biosynthesis.transcriptional activation.HB... 0.1 OrthoFinder output from all 47 species
GSVIVT01009273001 BP, BP1, KNAT1 RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
GSVIVT01013790001 KNAT6, KNAT6L, KNAT6S RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
GSVIVT01018257001 KNAT6, KNAT6L, KNAT6S RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
Gb_00572 BP, BP1, KNAT1 transcription factor (KNOX) 0.04 OrthoFinder output from all 47 species
Gb_00573 BUM1, SHL, STM,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Gb_10887 BP, BP1, KNAT1 transcription factor (KNOX) 0.06 OrthoFinder output from all 47 species
Gb_14470 BP, BP1, KNAT1 transcription factor (KNOX) 0.05 OrthoFinder output from all 47 species
LOC_Os01g19694.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.05 OrthoFinder output from all 47 species
Lfl_g12242 KNAT3 KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Mp5g01600.1 BUM1, SHL, STM,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Msp_g44272 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g05715 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25529 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g62008 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g10499 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g16367 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005308 BUM1, SHL, STM,... KNOX-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019792 KNAT7, IXR11 not classified & original description: CDS=1-462 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0115.g020964 BUM1, SHL, STM,... KNOX-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0142.g022803 No alias not classified & original description: CDS=20-451 0.02 OrthoFinder output from all 47 species
Sam_g23106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36645 No alias KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g40672 No alias KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g100510.4.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.06 OrthoFinder output from all 47 species
Solyc02g081120.4.1 BUM1, SHL, STM,... transcription factor (KNOX) 0.06 OrthoFinder output from all 47 species
Solyc05g005090.4.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.07 OrthoFinder output from all 47 species
Solyc07g007120.3.1 KNAT3, Solyc07g007120 transcription factor (KNOX) 0.04 OrthoFinder output from all 47 species
Solyc08g041820.3.1 KNAT3, Solyc08g041820 transcription factor (KNOX) 0.04 OrthoFinder output from all 47 species
Spa_g22911 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29512 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56194 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45614 KNAT4 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005170_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Zm00001e005545_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.09 OrthoFinder output from all 47 species
Zm00001e005547_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.07 OrthoFinder output from all 47 species
Zm00001e011538_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.09 OrthoFinder output from all 47 species
Zm00001e017489_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.06 OrthoFinder output from all 47 species
Zm00001e027562_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.09 OrthoFinder output from all 47 species
Zm00001e029453_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.06 OrthoFinder output from all 47 species
Zm00001e032761_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.07 OrthoFinder output from all 47 species
Zm00001e039044_P001 KNAT7, IXR11,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005102 signaling receptor binding IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
MF GO:0008083 growth factor activity IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0030545 signaling receptor regulator activity IEP HCCA
MF GO:0030546 signaling receptor activator activity IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0048018 receptor ligand activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR005541 KNOX2 131 186
IPR005540 KNOX1 73 111
IPR008422 Homeobox_KN_domain 279 318
IPR005539 ELK_dom 240 260
No external refs found!