LOC_Os03g56241.1 (LOC_Os03g56241)

Aliases : LOC_Os03g56241

Description : component RPS29 of SSU proteome

Gene families : OG0008810 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008810_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g56241.1
Cluster	HCCA: Cluster_14

Target	Alias	Description	ECC score	Gene Family Method
AT3G43980	No alias	Ribosomal protein S14p/S29e family protein	0.1	OrthoFinder output from all 47 species
AT3G44010	No alias	Ribosomal protein S14p/S29e family protein	0.19	OrthoFinder output from all 47 species
AT4G33865	No alias	Ribosomal protein S14p/S29e family protein	0.19	OrthoFinder output from all 47 species
Ceric.06G036200.1	Ceric.06G036200	component *(uS14) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.31G071600.1	Ceric.31G071600	component *(uS14) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cre08.g358556	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
Dac_g44969	No alias	component *(uS14) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01015056001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
MA_10436379g0010	No alias	component RPS29 of SSU proteome	0.04	OrthoFinder output from all 47 species
MA_336247g0010	No alias	component RPS29 of SSU proteome	0.02	OrthoFinder output from all 47 species
Mp5g15120.1	No alias	component RPS29 of SSU proteome	0.03	OrthoFinder output from all 47 species
Mp8g03910.1	No alias	component RPS29 of SSU proteome	0.05	OrthoFinder output from all 47 species
Pp3c14_10190V3.1	Pp3c14_10190	Ribosomal protein S14p/S29e family protein	0.03	OrthoFinder output from all 47 species
Pp3c2_6730V3.1	Pp3c2_6730	Ribosomal protein S14p/S29e family protein	0.03	OrthoFinder output from all 47 species
Smo171412	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Solyc06g073430.4.1	Solyc06g073430	component RPS29 of SSU proteome	0.13	OrthoFinder output from all 47 species
Solyc11g020877.1.1	Solyc11g020877	component RPS29 of SSU proteome	0.15	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
CC	GO:0008250	oligosaccharyltransferase complex	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
CC	GO:0034998	oligosaccharyltransferase I complex	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001209	Ribosomal_S14	7	56

External Links

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LOC_Os03g56241.1 (LOC_Os03g56241)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation