LOC_Os03g58160.1 (AT-HSFA6B, HSFA6B,...)

Aliases : AT-HSFA6B, HSFA6B, LOC_Os03g58160

Description : transcription factor (HSF)

Gene families : OG0000093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000093_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g58160.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g025747	HSFA1B, ATHSF3,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g28626	ATHSF1, HSF1,...	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g41017	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g11687	HSFA1B, ATHSF3,...	transcriptional regulator *(HsfA1) & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g22391	AT-HSFA6B, HSFA6B	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g05680	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g10301	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01013107001	No alias	RNA biosynthesis.transcriptional activation.HSF (heat...	0.04	OrthoFinder output from all 47 species
GSVIVT01037333001	HSFB4, SCZ, AT-HSFB4	RNA biosynthesis.transcriptional activation.HSF (heat...	0.04	OrthoFinder output from all 47 species
Lfl_g07776	ATHSF1, HSF1,...	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MpVg00470.1	HSFA1B, ATHSF3,...	No annotation	0.03	OrthoFinder output from all 47 species
Nbi_g01134	ATHSF1, HSF1,...	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g07528	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g31638	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Zm00001e005982_P001	AT-HSFA6B,...	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
Zm00001e014583_P001	AT-HSFA5, HSFA5,...	transcription factor (HSF)	0.05	OrthoFinder output from all 47 species
Zm00001e014699_P003	HSFA3, AT-HSFA3,...	transcription factor (HSF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0018995	host cellular component	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000232	HSF_DNA-bd	39	128

External Links

No external refs found!

LOC_Os03g58160.1 (AT-HSFA6B, HSFA6B,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation