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  5. LOC_Os03g60200.1

LOC_Os03g60200.1 (LOC_Os03g60200)


Aliases : LOC_Os03g60200

Description : Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana (sp|q8s9m4|pp198_arath : 692.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g60200.1
Cluster HCCA: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
Adi_g004435 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g018648 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036254 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g042918 CRR21 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17868 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g03125 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09079 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g26992 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene29888.t1 Aspi01Gene29888 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0065.g035815 No alias not classified & original description: CDS=1-2163 0.01 OrthoFinder output from all 47 species
Azfi_s0074.g037480 OTP82 not classified & original description: CDS=1-1485 0.03 OrthoFinder output from all 47 species
Azfi_s1334.g101644 No alias not classified & original description: CDS=1-3543 0.01 OrthoFinder output from all 47 species
Dcu_g41962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g24299 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g63560.1 LOC_Os03g63560 OTP70 plastidial RNA splicing factor 0.01 OrthoFinder output from all 47 species
Lfl_g32796 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g33676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46044 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g04948 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g14898 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g29103 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25357 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g63629 LPA66 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18862 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g33539 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g46657 No alias ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g52997 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53730 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29135 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37954 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo172234 No alias Pentatricopeptide repeat-containing protein At4g14050,... 0.02 OrthoFinder output from all 47 species
Zm00001e007462_P001 Zm00001e007462 Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 339 386
IPR002885 Pentatricopeptide_repeat 106 138
IPR002885 Pentatricopeptide_repeat 413 437
IPR002885 Pentatricopeptide_repeat 140 168
IPR002885 Pentatricopeptide_repeat 237 284
IPR032867 DYW_dom 512 636
No external refs found!