LOC_Os03g60390.1 (AL2, LOC_Os03g60390)

Aliases : AL2, LOC_Os03g60390

Description : Alfin-like transcription factor

Gene families : OG0000258 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g60390.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g011436	AL7	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Als_g06205	AL2	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Ceric.28G025600.1	AL1, Ceric.28G025600	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Dcu_g02640	AL2	methylation reader Alfin of PRC1 complex & original...	0.05	OrthoFinder output from all 47 species
Dde_g05730	AL1	methylation reader Alfin of PRC1 complex & original...	0.04	OrthoFinder output from all 47 species
Dde_g28698	AL2	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Solyc12g096040.3.1	AL4, Solyc12g096040	Alfin-like transcription factor	0.03	OrthoFinder output from all 47 species
Tin_g15615	AL1	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Tin_g43670	AL5	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Zm00001e014851_P004	AL5, Zm00001e014851	Alfin-like transcription factor	0.04	OrthoFinder output from all 47 species
Zm00001e021294_P001	AL7, Zm00001e021294	Alfin-like transcription factor	0.04	OrthoFinder output from all 47 species
Zm00001e035527_P001	AL5, Zm00001e035527	Alfin-like transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e040941_P001	AL6, Zm00001e040941	Alfin-like transcription factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0042393	histone binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR021998	Alfin_N	15	140
IPR019787	Znf_PHD-finger	190	239

External Links

No external refs found!

LOC_Os03g60390.1 (AL2, LOC_Os03g60390)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation